Alignment Stats
| Sequence pairs analysed in total |
50134077 |
| Paired-end alignments with a unique best hit |
19218821 |
| Pairs without alignments under any condition |
25898695 |
| Pairs that did not map uniquely |
5016561 |
| Genomic sequence context not extractable (edges of chromosomes) |
779 |
|
|
Cytosine Methylation
| Total C's analysed |
672652797 |
| Methylated C's in CpG context |
10613837 |
| Methylated C's in CHG context |
526214 |
| Methylated C's in CHH context |
2064235 |
| Methylated C's in Unknown context |
4433 |
| Unmethylated C's in CpG context |
76566493 |
| Unmethylated C's in CHG context |
119341117 |
| Unmethylated C's in CHH context |
463540901 |
| Unmethylated C's in Unknown context |
451024 |
| Percentage methylation (CpG context) |
12.2% |
| Percentage methylation (CHG context) |
0.4% |
| Percentage methylation (CHH context) |
0.4% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
4811418 |
original top strand |
| CTOT |
4787632 |
complementary to original top strand |
| CTOB |
4799974 |
complementary to original bottom strand |
| OB |
4819018 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
19218042 |
| Unique alignments |
16957597 |
| Duplicates removed |
2260445 |
| Duplicated alignments were found at 2000998 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
382781966 |
| Methylated C's in CpG context |
5910985 |
| Methylated C's in CHG context |
296157 |
| Methylated C's in CHH context |
1171795 |
| Unmethylated C's in CpG context |
43275050 |
| Unmethylated C's in CHG context |
67314545 |
| Unmethylated C's in CHH context |
264813434 |
| Percentage methylation (CpG context) |
12.0% |
| Percentage methylation (CHG context) |
0.4% |
| Percentage methylation (CHH context) |
0.4% |
|
|
M-Bias Plot
