Alignment Stats
| Sequence pairs analysed in total |
58102004 |
| Paired-end alignments with a unique best hit |
22135736 |
| Pairs without alignments under any condition |
30647323 |
| Pairs that did not map uniquely |
5318945 |
| Genomic sequence context not extractable (edges of chromosomes) |
911 |
|
|
Cytosine Methylation
| Total C's analysed |
787565112 |
| Methylated C's in CpG context |
13137960 |
| Methylated C's in CHG context |
629574 |
| Methylated C's in CHH context |
2500759 |
| Methylated C's in Unknown context |
6039 |
| Unmethylated C's in CpG context |
88228425 |
| Unmethylated C's in CHG context |
138512773 |
| Unmethylated C's in CHH context |
544555621 |
| Unmethylated C's in Unknown context |
545051 |
| Percentage methylation (CpG context) |
13.0% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
5563993 |
original top strand |
| CTOT |
5501241 |
complementary to original top strand |
| CTOB |
5504319 |
complementary to original bottom strand |
| OB |
5565272 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
22134825 |
| Unique alignments |
19595048 |
| Duplicates removed |
2539777 |
| Duplicated alignments were found at 2253810 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
468134760 |
| Methylated C's in CpG context |
7640366 |
| Methylated C's in CHG context |
369842 |
| Methylated C's in CHH context |
1479955 |
| Unmethylated C's in CpG context |
52140889 |
| Unmethylated C's in CHG context |
81627664 |
| Unmethylated C's in CHH context |
324876044 |
| Percentage methylation (CpG context) |
12.8% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
|
|
M-Bias Plot
