Alignment Stats
| Sequence pairs analysed in total |
36184563 |
| Paired-end alignments with a unique best hit |
13543064 |
| Pairs without alignments under any condition |
19378814 |
| Pairs that did not map uniquely |
3262685 |
| Genomic sequence context not extractable (edges of chromosomes) |
540 |
|
|
Cytosine Methylation
| Total C's analysed |
480027296 |
| Methylated C's in CpG context |
8480484 |
| Methylated C's in CHG context |
392938 |
| Methylated C's in CHH context |
1533847 |
| Methylated C's in Unknown context |
3945 |
| Unmethylated C's in CpG context |
53333962 |
| Unmethylated C's in CHG context |
84692824 |
| Unmethylated C's in CHH context |
331593241 |
| Unmethylated C's in Unknown context |
320465 |
| Percentage methylation (CpG context) |
13.7% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
3381915 |
original top strand |
| CTOT |
3386033 |
complementary to original top strand |
| CTOB |
3387373 |
complementary to original bottom strand |
| OB |
3387203 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
13542524 |
| Unique alignments |
12175386 |
| Duplicates removed |
1367138 |
| Duplicated alignments were found at 1228190 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
288813843 |
| Methylated C's in CpG context |
4988717 |
| Methylated C's in CHG context |
233913 |
| Methylated C's in CHH context |
918413 |
| Unmethylated C's in CpG context |
31936140 |
| Unmethylated C's in CHG context |
50526206 |
| Unmethylated C's in CHH context |
200210454 |
| Percentage methylation (CpG context) |
13.5% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
|
|
M-Bias Plot
