Alignment Stats
| Sequence pairs analysed in total |
52950721 |
| Paired-end alignments with a unique best hit |
19985416 |
| Pairs without alignments under any condition |
28114199 |
| Pairs that did not map uniquely |
4851106 |
| Genomic sequence context not extractable (edges of chromosomes) |
903 |
|
|
Cytosine Methylation
| Total C's analysed |
714200604 |
| Methylated C's in CpG context |
11090841 |
| Methylated C's in CHG context |
566665 |
| Methylated C's in CHH context |
2241192 |
| Methylated C's in Unknown context |
4824 |
| Unmethylated C's in CpG context |
80665715 |
| Unmethylated C's in CHG context |
125693566 |
| Unmethylated C's in CHH context |
493942625 |
| Unmethylated C's in Unknown context |
499338 |
| Percentage methylation (CpG context) |
12.1% |
| Percentage methylation (CHG context) |
0.4% |
| Percentage methylation (CHH context) |
0.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
5017886 |
original top strand |
| CTOT |
4965872 |
complementary to original top strand |
| CTOB |
4976476 |
complementary to original bottom strand |
| OB |
5024279 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
19984513 |
| Unique alignments |
17662731 |
| Duplicates removed |
2321782 |
| Duplicated alignments were found at 2056618 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
427676475 |
| Methylated C's in CpG context |
6502393 |
| Methylated C's in CHG context |
335205 |
| Methylated C's in CHH context |
1334605 |
| Unmethylated C's in CpG context |
47981015 |
| Unmethylated C's in CHG context |
74622637 |
| Unmethylated C's in CHH context |
296900620 |
| Percentage methylation (CpG context) |
11.9% |
| Percentage methylation (CHG context) |
0.4% |
| Percentage methylation (CHH context) |
0.4% |
|
|
M-Bias Plot
