Alignment Stats
| Sequence pairs analysed in total |
46634543 |
| Paired-end alignments with a unique best hit |
17658705 |
| Pairs without alignments under any condition |
24771302 |
| Pairs that did not map uniquely |
4204536 |
| Genomic sequence context not extractable (edges of chromosomes) |
742 |
|
|
Cytosine Methylation
| Total C's analysed |
621973155 |
| Methylated C's in CpG context |
8812032 |
| Methylated C's in CHG context |
461909 |
| Methylated C's in CHH context |
1882739 |
| Methylated C's in Unknown context |
4125 |
| Unmethylated C's in CpG context |
69583720 |
| Unmethylated C's in CHG context |
106686865 |
| Unmethylated C's in CHH context |
434545890 |
| Unmethylated C's in Unknown context |
446519 |
| Percentage methylation (CpG context) |
11.2% |
| Percentage methylation (CHG context) |
0.4% |
| Percentage methylation (CHH context) |
0.4% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
4416453 |
original top strand |
| CTOT |
4416920 |
complementary to original top strand |
| CTOB |
4410252 |
complementary to original bottom strand |
| OB |
4414338 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
17657963 |
| Unique alignments |
15735538 |
| Duplicates removed |
1922425 |
| Duplicated alignments were found at 1716901 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
367870994 |
| Methylated C's in CpG context |
5088445 |
| Methylated C's in CHG context |
270615 |
| Methylated C's in CHH context |
1111798 |
| Unmethylated C's in CpG context |
40900863 |
| Unmethylated C's in CHG context |
62547662 |
| Unmethylated C's in CHH context |
257951611 |
| Percentage methylation (CpG context) |
11.1% |
| Percentage methylation (CHG context) |
0.4% |
| Percentage methylation (CHH context) |
0.4% |
|
|
M-Bias Plot
