Alignment Stats
| Sequence pairs analysed in total |
55732442 |
| Paired-end alignments with a unique best hit |
21036214 |
| Pairs without alignments under any condition |
29367085 |
| Pairs that did not map uniquely |
5329143 |
| Genomic sequence context not extractable (edges of chromosomes) |
975 |
|
|
Cytosine Methylation
| Total C's analysed |
745372684 |
| Methylated C's in CpG context |
11759767 |
| Methylated C's in CHG context |
583657 |
| Methylated C's in CHH context |
2301494 |
| Methylated C's in Unknown context |
5178 |
| Unmethylated C's in CpG context |
84865286 |
| Unmethylated C's in CHG context |
131980373 |
| Unmethylated C's in CHH context |
513882107 |
| Unmethylated C's in Unknown context |
515663 |
| Percentage methylation (CpG context) |
12.2% |
| Percentage methylation (CHG context) |
0.4% |
| Percentage methylation (CHH context) |
0.4% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
5274769 |
original top strand |
| CTOT |
5241321 |
complementary to original top strand |
| CTOB |
5239540 |
complementary to original bottom strand |
| OB |
5279609 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
21035239 |
| Unique alignments |
18648722 |
| Duplicates removed |
2386517 |
| Duplicated alignments were found at 2116154 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
439858992 |
| Methylated C's in CpG context |
6792165 |
| Methylated C's in CHG context |
340767 |
| Methylated C's in CHH context |
1351971 |
| Unmethylated C's in CpG context |
49719278 |
| Unmethylated C's in CHG context |
77181294 |
| Unmethylated C's in CHH context |
304473517 |
| Percentage methylation (CpG context) |
12.0% |
| Percentage methylation (CHG context) |
0.4% |
| Percentage methylation (CHH context) |
0.4% |
|
|
M-Bias Plot
