Alignment Stats
| Sequence pairs analysed in total |
51598026 |
| Paired-end alignments with a unique best hit |
19467008 |
| Pairs without alignments under any condition |
27198263 |
| Pairs that did not map uniquely |
4932755 |
| Genomic sequence context not extractable (edges of chromosomes) |
884 |
|
|
Cytosine Methylation
| Total C's analysed |
692393511 |
| Methylated C's in CpG context |
11228231 |
| Methylated C's in CHG context |
541798 |
| Methylated C's in CHH context |
2141952 |
| Methylated C's in Unknown context |
5079 |
| Unmethylated C's in CpG context |
78888513 |
| Unmethylated C's in CHG context |
123028731 |
| Unmethylated C's in CHH context |
476564286 |
| Unmethylated C's in Unknown context |
476688 |
| Percentage methylation (CpG context) |
12.5% |
| Percentage methylation (CHG context) |
0.4% |
| Percentage methylation (CHH context) |
0.4% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
4912865 |
original top strand |
| CTOT |
4826893 |
complementary to original top strand |
| CTOB |
4820832 |
complementary to original bottom strand |
| OB |
4905534 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
19466124 |
| Unique alignments |
17225745 |
| Duplicates removed |
2240379 |
| Duplicated alignments were found at 1983600 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
407708793 |
| Methylated C's in CpG context |
6463484 |
| Methylated C's in CHG context |
315560 |
| Methylated C's in CHH context |
1254377 |
| Unmethylated C's in CpG context |
46100397 |
| Unmethylated C's in CHG context |
71773057 |
| Unmethylated C's in CHH context |
281801918 |
| Percentage methylation (CpG context) |
12.3% |
| Percentage methylation (CHG context) |
0.4% |
| Percentage methylation (CHH context) |
0.4% |
|
|
M-Bias Plot
