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        If you use plots from MultiQC in a publication or presentation, please cite:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

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        About MultiQC

        This report was generated using MultiQC, version 1.8

        You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0

        For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info

        You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/ewels/MultiQC

        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

        Report generated on 2021-02-27, 09:52 based on data in: /gscratch/scrubbed/sr320/021421-hw-bsn

        General Statistics

        Showing 24/24 rows and 6/8 columns.
        Sample Name% mCpG% mCHG% mCHHM C's% Dups% Aligned
        zr3644_10_R1
        12.3%
        0.4%
        0.4%
        407.7
        11.5%
        37.7%
        zr3644_11_R1
        12.0%
        0.4%
        0.4%
        439.9
        11.3%
        37.7%
        zr3644_12_R1
        11.1%
        0.4%
        0.4%
        367.9
        10.9%
        37.9%
        zr3644_13_R1
        11.9%
        0.4%
        0.4%
        427.7
        11.6%
        37.7%
        zr3644_14_R1
        13.5%
        0.5%
        0.5%
        288.8
        10.1%
        37.4%
        zr3644_15_R1
        12.8%
        0.5%
        0.5%
        468.1
        11.5%
        38.1%
        zr3644_16_R1
        12.0%
        0.4%
        0.4%
        382.8
        11.8%
        38.3%
        zr3644_17_R1
        11.9%
        0.5%
        0.5%
        460.3
        12.1%
        38.5%
        zr3644_18_R1
        12.1%
        0.4%
        0.5%
        418.4
        10.8%
        39.0%
        zr3644_19_R1
        11.7%
        0.4%
        0.4%
        393.6
        10.2%
        38.1%
        zr3644_1_R1
        11.0%
        0.4%
        0.4%
        393.9
        11.9%
        38.2%
        zr3644_20_R1
        11.9%
        0.5%
        0.5%
        392.1
        11.0%
        34.2%
        zr3644_21_R1
        11.9%
        0.4%
        0.4%
        399.5
        11.1%
        37.2%
        zr3644_22_R1
        11.9%
        0.5%
        0.5%
        384.1
        11.2%
        38.6%
        zr3644_23_R1
        11.7%
        0.4%
        0.5%
        319.2
        11.1%
        38.5%
        zr3644_24_R1
        11.8%
        0.4%
        0.4%
        424.3
        11.5%
        38.5%
        zr3644_2_R1
        11.6%
        0.4%
        0.4%
        441.0
        12.1%
        37.3%
        zr3644_3_R1
        11.8%
        0.4%
        0.4%
        312.5
        9.9%
        37.5%
        zr3644_4_R1
        11.5%
        0.4%
        0.4%
        385.9
        11.2%
        37.3%
        zr3644_5_R1
        11.9%
        0.4%
        0.4%
        347.1
        10.3%
        36.8%
        zr3644_6_R1
        11.8%
        0.4%
        0.4%
        424.7
        11.7%
        38.1%
        zr3644_7_R1
        12.0%
        0.4%
        0.4%
        644.3
        10.9%
        37.2%
        zr3644_8_R1
        12.2%
        0.5%
        0.5%
        336.1
        10.4%
        37.8%
        zr3644_9_R1
        12.4%
        0.4%
        0.4%
        361.0
        12.1%
        38.8%

        Bismark

        Bismark is a tool to map bisulfite converted sequence reads and determine cytosine methylation states.

        Alignment Rates

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        Deduplication

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        Strand Alignment

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        Cytosine Methylation

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        M-Bias

        This plot shows the average percentage methylation and coverage across reads. See the bismark user guide for more information on how these numbers are generated.

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        MultiQC v1.8 - Written by Phil Ewels, available on GitHub.

        This report uses HighCharts, jQuery, jQuery UI, Bootstrap, FileSaver.js and clipboard.js.