[2021-02-27 09:52:56,446] multiqc [DEBUG ] No MultiQC config found: /gscratch/srlab/programs/anaconda3/lib/python3.7/site-packages/multiqc_config.yaml [2021-02-27 09:52:56,446] multiqc [DEBUG ] No MultiQC config found: /usr/lusers/sr320/.multiqc_config.yaml [2021-02-27 09:52:56,446] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2021-02-27 09:52:56,446] multiqc [DEBUG ] Command used: /gscratch/srlab/programs/anaconda3/bin/multiqc . [2021-02-27 09:52:57,167] multiqc [WARNING] MultiQC Version v1.9 now available! [2021-02-27 09:52:57,167] multiqc [INFO ] This is MultiQC v1.8 [2021-02-27 09:52:57,167] multiqc [DEBUG ] Command : /gscratch/srlab/programs/anaconda3/bin/multiqc . [2021-02-27 09:52:57,167] multiqc [DEBUG ] Working dir : /gscratch/scrubbed/sr320/021421-hw-bsn [2021-02-27 09:52:57,167] multiqc [INFO ] Template : default [2021-02-27 09:52:57,168] multiqc [DEBUG ] Running Python 3.7.3 (default, Mar 27 2019, 22:11:17) [GCC 7.3.0] [2021-02-27 09:52:57,168] multiqc [INFO ] Searching : /gscratch/scrubbed/sr320/021421-hw-bsn [2021-02-27 09:52:57,168] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, methylQA, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, trimmomatic, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, minionqc, mosdepth, clusterflow, bcl2fastq, interop, flash, seqyclean [2021-02-27 09:52:57,168] multiqc [DEBUG ] Using temporary directory for creating report: /tmp/tmpz97enadk [2021-02-27 09:52:57,282] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_11_R1.fastp-trim.20201206_bismark_bt2_PE_report.html [2021-02-27 09:52:57,328] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_4_R1.fastp-trim.20201206_bismark_bt2_pe.deduplicated.sorted.bam.bai [2021-02-27 09:52:57,338] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_18_R1.fastp-trim.20201206_bismark_bt2_pe.bam [2021-02-27 09:52:57,390] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_6_R1.fastp-trim.20201206_bismark_bt2_pe.bam [2021-02-27 09:52:57,467] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_4_R1.fastp-trim.20201206_bismark_bt2_pe.deduplicated.bam [2021-02-27 09:52:57,469] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_10_R1.fastp-trim.20201206_bismark_bt2_pe.deduplicated.sorted.bam.bai [2021-02-27 09:52:57,512] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_18_R1.fastp-trim.20201206_bismark_bt2_pe.deduplicated.sorted.bam [2021-02-27 09:52:57,513] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_19_R1.fastp-trim.20201206_bismark_bt2_PE_report.html [2021-02-27 09:52:57,515] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_5_R1.fastp-trim.20201206_bismark_bt2_pe.deduplicated.sorted.bam.bai [2021-02-27 09:52:57,517] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_9_R1.fastp-trim.20201206_bismark_bt2_pe.deduplicated.sorted.bam [2021-02-27 09:52:57,542] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_16_R1.fastp-trim.20201206_bismark_bt2_pe.deduplicated.sorted.bam [2021-02-27 09:52:57,543] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_19_R1.fastp-trim.20201206_bismark_bt2_pe.deduplicated.sorted.bam [2021-02-27 09:52:57,562] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_7_R1.fastp-trim.20201206_bismark_bt2_pe.deduplicated.sorted.bam.bai [2021-02-27 09:52:57,588] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_8_R1.fastp-trim.20201206_bismark_bt2_PE_report.html [2021-02-27 09:52:57,589] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_1_R1.fastp-trim.20201206_bismark_bt2_pe.deduplicated.bam [2021-02-27 09:52:57,605] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: bismark_summary_report.txt [2021-02-27 09:52:57,607] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: bismark_summary_report.txt [2021-02-27 09:52:57,620] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_19_R1.fastp-trim.20201206_bismark_bt2_pe.bam [2021-02-27 09:52:57,620] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_2_R1.fastp-trim.20201206_bismark_bt2_pe.deduplicated.bam [2021-02-27 09:52:57,620] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_12_R1.fastp-trim.20201206_bismark_bt2_pe.deduplicated.bam [2021-02-27 09:52:57,621] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_24_R1.fastp-trim.20201206_bismark_bt2_pe.deduplicated.sorted.bam [2021-02-27 09:52:57,622] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_9_R1.fastp-trim.20201206_bismark_bt2_pe.deduplicated.sorted.bam.bai [2021-02-27 09:52:57,623] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_12_R1.fastp-trim.20201206_bismark_bt2_PE_report.html [2021-02-27 09:52:57,623] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_6_R1.fastp-trim.20201206_bismark_bt2_PE_report.html [2021-02-27 09:52:57,623] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_9_R1.fastp-trim.20201206_bismark_bt2_pe.bam [2021-02-27 09:52:57,623] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_9_R1.fastp-trim.20201206_bismark_bt2_pe.deduplicated.bam [2021-02-27 09:52:57,624] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_21_R1.fastp-trim.20201206_bismark_bt2_pe.deduplicated.sorted.bam [2021-02-27 09:52:57,625] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_6_R1.fastp-trim.20201206_bismark_bt2_pe.deduplicated.sorted.bam [2021-02-27 09:52:57,625] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_21_R1.fastp-trim.20201206_bismark_bt2_pe.deduplicated.bam [2021-02-27 09:52:57,625] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_20_R1.fastp-trim.20201206_bismark_bt2_pe.bam [2021-02-27 09:52:57,626] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_23_R1.fastp-trim.20201206_bismark_bt2_pe.bam [2021-02-27 09:52:57,626] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_1_R1.fastp-trim.20201206_bismark_bt2_pe.deduplicated.sorted.bam.bai [2021-02-27 09:52:57,626] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_23_R1.fastp-trim.20201206_bismark_bt2_PE_report.html [2021-02-27 09:52:57,627] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_21_R1.fastp-trim.20201206_bismark_bt2_PE_report.html [2021-02-27 09:52:57,628] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_6_R1.fastp-trim.20201206_bismark_bt2_pe.deduplicated.bam [2021-02-27 09:52:57,628] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_10_R1.fastp-trim.20201206_bismark_bt2_PE_report.html [2021-02-27 09:52:57,629] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_21_R1.fastp-trim.20201206_bismark_bt2_pe.bam [2021-02-27 09:52:57,629] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_20_R1.fastp-trim.20201206_bismark_bt2_pe.deduplicated.sorted.bam [2021-02-27 09:52:57,630] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_1_R1.fastp-trim.20201206_bismark_bt2_pe.deduplicated.sorted.bam [2021-02-27 09:52:57,630] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_23_R1.fastp-trim.20201206_bismark_bt2_pe.deduplicated.sorted.bam [2021-02-27 09:52:57,631] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_23_R1.fastp-trim.20201206_bismark_bt2_pe.deduplicated.bam [2021-02-27 09:52:57,632] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_14_R1.fastp-trim.20201206_bismark_bt2_PE_report.html [2021-02-27 09:52:57,632] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_16_R1.fastp-trim.20201206_bismark_bt2_pe.deduplicated.bam [2021-02-27 09:52:57,632] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_17_R1.fastp-trim.20201206_bismark_bt2_pe.deduplicated.sorted.bam.bai [2021-02-27 09:52:57,633] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_24_R1.fastp-trim.20201206_bismark_bt2_PE_report.html [2021-02-27 09:52:57,633] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_22_R1.fastp-trim.20201206_bismark_bt2_PE_report.html [2021-02-27 09:52:57,633] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_12_R1.fastp-trim.20201206_bismark_bt2_pe.deduplicated.sorted.bam [2021-02-27 09:52:57,658] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_7_R1.fastp-trim.20201206_bismark_bt2_pe.deduplicated.sorted.bam [2021-02-27 09:52:57,658] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_15_R1.fastp-trim.20201206_bismark_bt2_pe.deduplicated.bam [2021-02-27 09:52:57,658] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_20_R1.fastp-trim.20201206_bismark_bt2_pe.deduplicated.sorted.bam.bai [2021-02-27 09:52:57,658] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_12_R1.fastp-trim.20201206_bismark_bt2_pe.deduplicated.sorted.bam.bai [2021-02-27 09:52:57,659] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_22_R1.fastp-trim.20201206_bismark_bt2_pe.deduplicated.sorted.bam.bai [2021-02-27 09:52:57,659] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_18_R1.fastp-trim.20201206_bismark_bt2_PE_report.html [2021-02-27 09:52:57,659] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_15_R1.fastp-trim.20201206_bismark_bt2_PE_report.html [2021-02-27 09:52:57,659] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_24_R1.fastp-trim.20201206_bismark_bt2_pe.bam [2021-02-27 09:52:57,660] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_19_R1.fastp-trim.20201206_bismark_bt2_pe.deduplicated.sorted.bam.bai [2021-02-27 09:52:57,660] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_6_R1.fastp-trim.20201206_bismark_bt2_pe.deduplicated.sorted.bam.bai [2021-02-27 09:52:57,661] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_11_R1.fastp-trim.20201206_bismark_bt2_pe.bam [2021-02-27 09:52:57,662] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_7_R1.fastp-trim.20201206_bismark_bt2_pe.bam [2021-02-27 09:52:57,662] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_13_R1.fastp-trim.20201206_bismark_bt2_pe.deduplicated.sorted.bam.bai [2021-02-27 09:52:57,662] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_21_R1.fastp-trim.20201206_bismark_bt2_pe.deduplicated.sorted.bam.bai [2021-02-27 09:52:57,662] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_14_R1.fastp-trim.20201206_bismark_bt2_pe.deduplicated.sorted.bam [2021-02-27 09:52:57,662] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_17_R1.fastp-trim.20201206_bismark_bt2_pe.deduplicated.bam [2021-02-27 09:52:57,663] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: bismark_summary_report.html [2021-02-27 09:52:57,664] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_12_R1.fastp-trim.20201206_bismark_bt2_pe.bam [2021-02-27 09:52:57,665] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_22_R1.fastp-trim.20201206_bismark_bt2_pe.deduplicated.bam [2021-02-27 09:52:57,665] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_16_R1.fastp-trim.20201206_bismark_bt2_pe.bam [2021-02-27 09:52:57,665] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_24_R1.fastp-trim.20201206_bismark_bt2_pe.deduplicated.bam [2021-02-27 09:52:57,666] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_3_R1.fastp-trim.20201206_bismark_bt2_pe.deduplicated.bam [2021-02-27 09:52:57,666] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_9_R1.fastp-trim.20201206_bismark_bt2_PE_report.html [2021-02-27 09:52:57,667] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_8_R1.fastp-trim.20201206_bismark_bt2_pe.deduplicated.sorted.bam.bai [2021-02-27 09:52:57,667] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_2_R1.fastp-trim.20201206_bismark_bt2_pe.bam [2021-02-27 09:52:57,668] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_3_R1.fastp-trim.20201206_bismark_bt2_pe.bam [2021-02-27 09:52:57,668] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_14_R1.fastp-trim.20201206_bismark_bt2_pe.bam [2021-02-27 09:52:57,669] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_2_R1.fastp-trim.20201206_bismark_bt2_PE_report.html [2021-02-27 09:52:57,669] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_11_R1.fastp-trim.20201206_bismark_bt2_pe.deduplicated.bam [2021-02-27 09:52:57,669] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_5_R1.fastp-trim.20201206_bismark_bt2_pe.deduplicated.bam [2021-02-27 09:52:57,670] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_11_R1.fastp-trim.20201206_bismark_bt2_pe.deduplicated.sorted.bam.bai [2021-02-27 09:52:57,670] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_10_R1.fastp-trim.20201206_bismark_bt2_pe.deduplicated.bam [2021-02-27 09:52:57,671] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_5_R1.fastp-trim.20201206_bismark_bt2_pe.bam [2021-02-27 09:52:57,671] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_11_R1.fastp-trim.20201206_bismark_bt2_pe.deduplicated.sorted.bam [2021-02-27 09:52:57,673] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_8_R1.fastp-trim.20201206_bismark_bt2_pe.deduplicated.sorted.bam [2021-02-27 09:52:57,673] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_7_R1.fastp-trim.20201206_bismark_bt2_PE_report.html [2021-02-27 09:52:57,674] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_13_R1.fastp-trim.20201206_bismark_bt2_PE_report.html [2021-02-27 09:52:57,675] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_22_R1.fastp-trim.20201206_bismark_bt2_pe.bam [2021-02-27 09:52:57,676] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_3_R1.fastp-trim.20201206_bismark_bt2_pe.deduplicated.sorted.bam [2021-02-27 09:52:57,676] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_2_R1.fastp-trim.20201206_bismark_bt2_pe.deduplicated.sorted.bam [2021-02-27 09:52:57,676] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_10_R1.fastp-trim.20201206_bismark_bt2_pe.deduplicated.sorted.bam [2021-02-27 09:52:57,676] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_13_R1.fastp-trim.20201206_bismark_bt2_pe.deduplicated.sorted.bam [2021-02-27 09:52:57,678] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_18_R1.fastp-trim.20201206_bismark_bt2_pe.deduplicated.sorted.bam.bai [2021-02-27 09:52:57,678] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_4_R1.fastp-trim.20201206_bismark_bt2_pe.deduplicated.sorted.bam [2021-02-27 09:52:57,678] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_20_R1.fastp-trim.20201206_bismark_bt2_pe.deduplicated.bam [2021-02-27 09:52:57,679] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_16_R1.fastp-trim.20201206_bismark_bt2_pe.deduplicated.sorted.bam.bai [2021-02-27 09:52:57,680] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_5_R1.fastp-trim.20201206_bismark_bt2_PE_report.html [2021-02-27 09:52:57,681] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_22_R1.fastp-trim.20201206_bismark_bt2_pe.deduplicated.sorted.bam [2021-02-27 09:52:57,681] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_15_R1.fastp-trim.20201206_bismark_bt2_pe.deduplicated.sorted.bam [2021-02-27 09:52:57,681] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_4_R1.fastp-trim.20201206_bismark_bt2_pe.bam [2021-02-27 09:52:57,682] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_1_R1.fastp-trim.20201206_bismark_bt2_pe.bam [2021-02-27 09:52:57,683] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_2_R1.fastp-trim.20201206_bismark_bt2_pe.deduplicated.sorted.bam.bai [2021-02-27 09:52:57,683] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_8_R1.fastp-trim.20201206_bismark_bt2_pe.bam [2021-02-27 09:52:57,683] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_24_R1.fastp-trim.20201206_bismark_bt2_pe.deduplicated.sorted.bam.bai [2021-02-27 09:52:57,684] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_8_R1.fastp-trim.20201206_bismark_bt2_pe.deduplicated.bam [2021-02-27 09:52:57,684] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_7_R1.fastp-trim.20201206_bismark_bt2_pe.deduplicated.bam [2021-02-27 09:52:57,685] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_18_R1.fastp-trim.20201206_bismark_bt2_pe.deduplicated.bam [2021-02-27 09:52:57,686] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_15_R1.fastp-trim.20201206_bismark_bt2_pe.bam [2021-02-27 09:52:57,686] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_14_R1.fastp-trim.20201206_bismark_bt2_pe.deduplicated.sorted.bam.bai [2021-02-27 09:52:57,687] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_17_R1.fastp-trim.20201206_bismark_bt2_pe.deduplicated.sorted.bam [2021-02-27 09:52:57,687] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_5_R1.fastp-trim.20201206_bismark_bt2_pe.deduplicated.sorted.bam [2021-02-27 09:52:57,687] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_10_R1.fastp-trim.20201206_bismark_bt2_pe.bam [2021-02-27 09:52:57,687] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_16_R1.fastp-trim.20201206_bismark_bt2_PE_report.html [2021-02-27 09:52:57,693] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: job.sh [2021-02-27 09:52:57,701] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_3_R1.fastp-trim.20201206_bismark_bt2_PE_report.html [2021-02-27 09:52:57,701] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_19_R1.fastp-trim.20201206_bismark_bt2_pe.deduplicated.bam [2021-02-27 09:52:57,701] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_3_R1.fastp-trim.20201206_bismark_bt2_pe.deduplicated.sorted.bam.bai [2021-02-27 09:52:57,702] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_1_R1.fastp-trim.20201206_bismark_bt2_PE_report.html [2021-02-27 09:52:57,704] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_14_R1.fastp-trim.20201206_bismark_bt2_pe.deduplicated.bam [2021-02-27 09:52:57,704] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_13_R1.fastp-trim.20201206_bismark_bt2_pe.deduplicated.bam [2021-02-27 09:52:57,705] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_13_R1.fastp-trim.20201206_bismark_bt2_pe.bam [2021-02-27 09:52:57,706] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_4_R1.fastp-trim.20201206_bismark_bt2_PE_report.html [2021-02-27 09:52:57,706] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_17_R1.fastp-trim.20201206_bismark_bt2_pe.bam [2021-02-27 09:52:57,706] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_17_R1.fastp-trim.20201206_bismark_bt2_PE_report.html [2021-02-27 09:52:57,707] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_23_R1.fastp-trim.20201206_bismark_bt2_pe.deduplicated.sorted.bam.bai [2021-02-27 09:52:57,709] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_20_R1.fastp-trim.20201206_bismark_bt2_PE_report.html [2021-02-27 09:52:57,709] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_15_R1.fastp-trim.20201206_bismark_bt2_pe.deduplicated.sorted.bam.bai [2021-02-27 09:52:57,920] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 2.2.4 [2021-02-27 09:52:57,920] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 2.2.4 [2021-02-27 09:52:57,921] multiqc [DEBUG ] No samples found: custom_content [2021-02-27 09:52:57,924] multiqc [DEBUG ] No samples found: conpair [2021-02-27 09:52:57,926] multiqc [DEBUG ] No samples found: peddy [2021-02-27 09:52:57,929] multiqc [DEBUG ] No samples found: methylQA [2021-02-27 09:52:57,932] multiqc [DEBUG ] No samples found: phantompeakqualtools [2021-02-27 09:52:57,935] multiqc [DEBUG ] No samples found: qualimap [2021-02-27 09:52:57,938] multiqc [DEBUG ] No samples found: preseq [2021-02-27 09:52:57,941] multiqc [DEBUG ] No samples found: quast [2021-02-27 09:52:57,944] multiqc [DEBUG ] No samples found: qorts [2021-02-27 09:52:57,946] multiqc [DEBUG ] No samples found: rna_seqc [2021-02-27 09:52:57,949] multiqc [DEBUG ] No samples found: rsem [2021-02-27 09:52:57,954] multiqc [DEBUG ] No samples found: rseqc [2021-02-27 09:52:57,957] multiqc [DEBUG ] No samples found: busco [2021-02-27 09:52:57,960] multiqc [DEBUG ] No samples found: goleft_indexcov [2021-02-27 09:52:57,962] multiqc [DEBUG ] No samples found: disambiguate [2021-02-27 09:52:57,965] multiqc [DEBUG ] No samples found: supernova [2021-02-27 09:52:57,970] multiqc [DEBUG ] No samples found: deeptools [2021-02-27 09:52:57,972] multiqc [DEBUG ] No samples found: sargasso [2021-02-27 09:52:57,975] multiqc [DEBUG ] No samples found: verifybamid [2021-02-27 09:52:57,978] multiqc [DEBUG ] No samples found: mirtrace [2021-02-27 09:52:57,981] multiqc [DEBUG ] No samples found: happy [2021-02-27 09:52:57,984] multiqc [DEBUG ] No samples found: homer [2021-02-27 09:52:57,987] multiqc [DEBUG ] No samples found: macs2 [2021-02-27 09:52:57,989] multiqc [DEBUG ] No samples found: theta2 [2021-02-27 09:52:57,992] multiqc [DEBUG ] No samples found: snpeff [2021-02-27 09:52:57,995] multiqc [DEBUG ] No samples found: gatk [2021-02-27 09:52:57,998] multiqc [DEBUG ] No samples found: htseq [2021-02-27 09:52:58,001] multiqc [DEBUG ] No samples found: bcftools [2021-02-27 09:52:58,004] multiqc [DEBUG ] No samples found: featureCounts [2021-02-27 09:52:58,007] multiqc [DEBUG ] No samples found: fgbio [2021-02-27 09:52:58,009] multiqc [DEBUG ] No samples found: dedup [2021-02-27 09:52:58,012] multiqc [DEBUG ] No samples found: damageprofiler [2021-02-27 09:52:58,018] multiqc [DEBUG ] No samples found: biobambam2 [2021-02-27 09:52:58,021] multiqc [DEBUG ] No samples found: mtnucratio [2021-02-27 09:52:58,023] multiqc [DEBUG ] No samples found: picard [2021-02-27 09:52:58,025] multiqc [DEBUG ] No samples found: prokka [2021-02-27 09:52:58,028] multiqc [DEBUG ] No samples found: samblaster [2021-02-27 09:52:58,032] multiqc [DEBUG ] No samples found: samtools [2021-02-27 09:52:58,035] multiqc [DEBUG ] No samples found: sexdeterrmine [2021-02-27 09:52:58,037] multiqc [DEBUG ] No samples found: bamtools [2021-02-27 09:52:58,040] multiqc [DEBUG ] No samples found: jellyfish [2021-02-27 09:52:58,044] multiqc [DEBUG ] No samples found: vcftools [2021-02-27 09:52:58,046] multiqc [DEBUG ] No samples found: longranger [2021-02-27 09:52:58,049] multiqc [DEBUG ] No samples found: stacks [2021-02-27 09:52:58,054] multiqc [DEBUG ] No samples found: bbmap [2021-02-27 09:52:58,680] multiqc.modules.bismark.bismark [INFO ] Found 24 bismark alignment reports [2021-02-27 09:52:58,683] multiqc.modules.bismark.bismark [INFO ] Found 24 bismark dedup reports [2021-02-27 09:52:58,684] multiqc.modules.bismark.bismark [INFO ] Found 24 bismark methextract reports [2021-02-27 09:52:58,719] multiqc [DEBUG ] No samples found: biscuit [2021-02-27 09:52:58,722] multiqc [DEBUG ] No samples found: hicexplorer [2021-02-27 09:52:58,726] multiqc [DEBUG ] No samples found: hicup [2021-02-27 09:52:58,730] multiqc [DEBUG ] No samples found: hicpro [2021-02-27 09:52:58,733] multiqc [DEBUG ] No samples found: salmon [2021-02-27 09:52:58,737] multiqc [DEBUG ] No samples found: kallisto [2021-02-27 09:52:58,741] multiqc [DEBUG ] No samples found: slamdunk [2021-02-27 09:52:58,745] multiqc [DEBUG ] No samples found: star [2021-02-27 09:52:58,748] multiqc [DEBUG ] No samples found: hisat2 [2021-02-27 09:52:58,751] multiqc [DEBUG ] No samples found: tophat [2021-02-27 09:52:58,755] multiqc [DEBUG ] No samples found: bowtie2 [2021-02-27 09:52:58,758] multiqc [DEBUG ] No samples found: bowtie1 [2021-02-27 09:52:58,762] multiqc [DEBUG ] No samples found: kat [2021-02-27 09:52:58,765] multiqc [DEBUG ] No samples found: leehom [2021-02-27 09:52:58,768] multiqc [DEBUG ] No samples found: adapterRemoval [2021-02-27 09:52:58,772] multiqc [DEBUG ] No samples found: clipandmerge [2021-02-27 09:52:58,778] multiqc [DEBUG ] No samples found: cutadapt [2021-02-27 09:52:58,784] multiqc [DEBUG ] No samples found: flexbar [2021-02-27 09:52:58,790] multiqc [DEBUG ] No samples found: trimmomatic [2021-02-27 09:52:58,794] multiqc [DEBUG ] No samples found: skewer [2021-02-27 09:52:58,798] multiqc [DEBUG ] No samples found: sortmerna [2021-02-27 09:52:58,802] multiqc [DEBUG ] No samples found: biobloomtools [2021-02-27 09:52:58,805] multiqc [DEBUG ] No samples found: fastq_screen [2021-02-27 09:52:58,809] multiqc [DEBUG ] No samples found: afterqc [2021-02-27 09:52:58,812] multiqc [DEBUG ] No samples found: fastp [2021-02-27 09:52:58,816] multiqc [DEBUG ] No samples found: fastqc [2021-02-27 09:52:58,820] multiqc [DEBUG ] No samples found: minionqc [2021-02-27 09:52:58,824] multiqc [DEBUG ] No samples found: mosdepth [2021-02-27 09:52:58,827] multiqc [DEBUG ] No samples found: clusterflow [2021-02-27 09:52:58,831] multiqc [DEBUG ] No samples found: bcl2fastq [2021-02-27 09:52:58,834] multiqc [DEBUG ] No samples found: interop [2021-02-27 09:52:58,838] multiqc [DEBUG ] No samples found: flash [2021-02-27 09:52:58,842] multiqc [DEBUG ] No samples found: seqyclean [2021-02-27 09:52:58,904] multiqc [INFO ] Compressing plot data [2021-02-27 09:52:59,203] multiqc [INFO ] Report : multiqc_report.html [2021-02-27 09:52:59,203] multiqc [INFO ] Data : multiqc_data [2021-02-27 09:52:59,204] multiqc [DEBUG ] Moving data file from '/tmp/tmpz97enadk/multiqc_data/multiqc_qualimap_bamqc_genome_results.txt' to '/gscratch/scrubbed/sr320/021421-hw-bsn/multiqc_data' [2021-02-27 09:52:59,206] multiqc [DEBUG ] Moving data file from '/tmp/tmpz97enadk/multiqc_data/multiqc_bismark_alignment.txt' to '/gscratch/scrubbed/sr320/021421-hw-bsn/multiqc_data' [2021-02-27 09:52:59,207] multiqc [DEBUG ] Moving data file from '/tmp/tmpz97enadk/multiqc_data/multiqc_bismark_dedup.txt' to '/gscratch/scrubbed/sr320/021421-hw-bsn/multiqc_data' [2021-02-27 09:52:59,208] multiqc [DEBUG ] Moving data file from '/tmp/tmpz97enadk/multiqc_data/multiqc_bismark_methextract.txt' to '/gscratch/scrubbed/sr320/021421-hw-bsn/multiqc_data' [2021-02-27 09:52:59,209] multiqc [DEBUG ] Moving data file from '/tmp/tmpz97enadk/multiqc_data/multiqc_general_stats.txt' to '/gscratch/scrubbed/sr320/021421-hw-bsn/multiqc_data' [2021-02-27 09:52:59,210] multiqc [DEBUG ] Moving data file from '/tmp/tmpz97enadk/multiqc_data/multiqc_sources.txt' to '/gscratch/scrubbed/sr320/021421-hw-bsn/multiqc_data' [2021-02-27 09:52:59,211] multiqc [DEBUG ] Moving data file from '/tmp/tmpz97enadk/multiqc_data/multiqc_data.json' to '/gscratch/scrubbed/sr320/021421-hw-bsn/multiqc_data' [2021-02-27 09:52:59,292] multiqc [INFO ] MultiQC complete