Alignment Stats
| Sequence pairs analysed in total |
47320068 |
| Paired-end alignments with a unique best hit |
29296232 |
| Pairs without alignments under any condition |
11480693 |
| Pairs that did not map uniquely |
6543143 |
| Genomic sequence context not extractable (edges of chromosomes) |
3326 |
|
|
Cytosine Methylation
| Total C's analysed |
1014421397 |
| Methylated C's in CpG context |
14478751 |
| Methylated C's in CHG context |
845611 |
| Methylated C's in CHH context |
3647281 |
| Methylated C's in Unknown context |
36018 |
| Unmethylated C's in CpG context |
115919786 |
| Unmethylated C's in CHG context |
177548109 |
| Unmethylated C's in CHH context |
701981859 |
| Unmethylated C's in Unknown context |
2493631 |
| Percentage methylation (CpG context) |
11.1% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
7352634 |
original top strand |
| CTOT |
7289661 |
complementary to original top strand |
| CTOB |
7293297 |
complementary to original bottom strand |
| OB |
7357314 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
29292906 |
| Unique alignments |
25606232 |
| Duplicates removed |
3686674 |
| Duplicated alignments were found at 3206124 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
581087866 |
| Methylated C's in CpG context |
8086032 |
| Methylated C's in CHG context |
479498 |
| Methylated C's in CHH context |
2089186 |
| Unmethylated C's in CpG context |
65981858 |
| Unmethylated C's in CHG context |
100761982 |
| Unmethylated C's in CHH context |
403689310 |
| Percentage methylation (CpG context) |
10.9% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
|
|
M-Bias Plot
