Alignment Stats
| Sequence pairs analysed in total |
42084665 |
| Paired-end alignments with a unique best hit |
26054281 |
| Pairs without alignments under any condition |
10634728 |
| Pairs that did not map uniquely |
5395656 |
| Genomic sequence context not extractable (edges of chromosomes) |
3214 |
|
|
Cytosine Methylation
| Total C's analysed |
915596076 |
| Methylated C's in CpG context |
12606352 |
| Methylated C's in CHG context |
794454 |
| Methylated C's in CHH context |
3447794 |
| Methylated C's in Unknown context |
31626 |
| Unmethylated C's in CpG context |
103960711 |
| Unmethylated C's in CHG context |
159084684 |
| Unmethylated C's in CHH context |
635702081 |
| Unmethylated C's in Unknown context |
2260462 |
| Percentage methylation (CpG context) |
10.8% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
6507057 |
original top strand |
| CTOT |
6512024 |
complementary to original top strand |
| CTOB |
6514597 |
complementary to original bottom strand |
| OB |
6517389 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
26051067 |
| Unique alignments |
23202668 |
| Duplicates removed |
2848399 |
| Duplicated alignments were found at 2518293 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
555970190 |
| Methylated C's in CpG context |
7498791 |
| Methylated C's in CHG context |
477736 |
| Methylated C's in CHH context |
2073193 |
| Unmethylated C's in CpG context |
62836784 |
| Unmethylated C's in CHG context |
95848491 |
| Unmethylated C's in CHH context |
387235195 |
| Percentage methylation (CpG context) |
10.7% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
|
|
M-Bias Plot
