Alignment Stats
| Sequence pairs analysed in total |
81002273 |
| Paired-end alignments with a unique best hit |
49862829 |
| Pairs without alignments under any condition |
21226484 |
| Pairs that did not map uniquely |
9912960 |
| Genomic sequence context not extractable (edges of chromosomes) |
6194 |
|
|
Cytosine Methylation
| Total C's analysed |
1758006995 |
| Methylated C's in CpG context |
23739641 |
| Methylated C's in CHG context |
1483719 |
| Methylated C's in CHH context |
6394648 |
| Methylated C's in Unknown context |
59090 |
| Unmethylated C's in CpG context |
197876058 |
| Unmethylated C's in CHG context |
302489755 |
| Unmethylated C's in CHH context |
1226023174 |
| Unmethylated C's in Unknown context |
4464600 |
| Percentage methylation (CpG context) |
10.7% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
12455478 |
original top strand |
| CTOT |
12463867 |
complementary to original top strand |
| CTOB |
12472451 |
complementary to original bottom strand |
| OB |
12464839 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
49856635 |
| Unique alignments |
44115943 |
| Duplicates removed |
5740692 |
| Duplicated alignments were found at 5010336 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
1073400308 |
| Methylated C's in CpG context |
14192196 |
| Methylated C's in CHG context |
895497 |
| Methylated C's in CHH context |
3867789 |
| Unmethylated C's in CpG context |
120186442 |
| Unmethylated C's in CHG context |
183148940 |
| Unmethylated C's in CHH context |
751109444 |
| Percentage methylation (CpG context) |
10.6% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
|
|
M-Bias Plot
