Alignment Stats
| Sequence pairs analysed in total |
52883485 |
| Paired-end alignments with a unique best hit |
32927367 |
| Pairs without alignments under any condition |
13405823 |
| Pairs that did not map uniquely |
6550295 |
| Genomic sequence context not extractable (edges of chromosomes) |
3803 |
|
|
Cytosine Methylation
| Total C's analysed |
1161276812 |
| Methylated C's in CpG context |
15428548 |
| Methylated C's in CHG context |
983123 |
| Methylated C's in CHH context |
4234417 |
| Methylated C's in Unknown context |
37887 |
| Unmethylated C's in CpG context |
131035907 |
| Unmethylated C's in CHG context |
200625235 |
| Unmethylated C's in CHH context |
808969582 |
| Unmethylated C's in Unknown context |
2915905 |
| Percentage methylation (CpG context) |
10.5% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
8241768 |
original top strand |
| CTOT |
8228543 |
complementary to original top strand |
| CTOB |
8222799 |
complementary to original bottom strand |
| OB |
8230454 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
32923564 |
| Unique alignments |
28907419 |
| Duplicates removed |
4016145 |
| Duplicated alignments were found at 3503295 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
697964845 |
| Methylated C's in CpG context |
9092790 |
| Methylated C's in CHG context |
584509 |
| Methylated C's in CHH context |
2524196 |
| Unmethylated C's in CpG context |
78430613 |
| Unmethylated C's in CHG context |
119686169 |
| Unmethylated C's in CHH context |
487646568 |
| Percentage methylation (CpG context) |
10.4% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
|
|
M-Bias Plot
