Alignment Stats
| Sequence pairs analysed in total |
43865548 |
| Paired-end alignments with a unique best hit |
27107123 |
| Pairs without alignments under any condition |
11405348 |
| Pairs that did not map uniquely |
5353077 |
| Genomic sequence context not extractable (edges of chromosomes) |
3174 |
|
|
Cytosine Methylation
| Total C's analysed |
958009481 |
| Methylated C's in CpG context |
12788107 |
| Methylated C's in CHG context |
806586 |
| Methylated C's in CHH context |
3444067 |
| Methylated C's in Unknown context |
31665 |
| Unmethylated C's in CpG context |
107783343 |
| Unmethylated C's in CHG context |
165366872 |
| Unmethylated C's in CHH context |
667820506 |
| Unmethylated C's in Unknown context |
2405194 |
| Percentage methylation (CpG context) |
10.6% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
6724227 |
original top strand |
| CTOT |
6820833 |
complementary to original top strand |
| CTOB |
6825668 |
complementary to original bottom strand |
| OB |
6733221 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
27103949 |
| Unique alignments |
24155648 |
| Duplicates removed |
2948301 |
| Duplicated alignments were found at 2604598 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
587256545 |
| Methylated C's in CpG context |
7677529 |
| Methylated C's in CHG context |
490345 |
| Methylated C's in CHH context |
2093840 |
| Unmethylated C's in CpG context |
65780729 |
| Unmethylated C's in CHG context |
100557046 |
| Unmethylated C's in CHH context |
410657056 |
| Percentage methylation (CpG context) |
10.5% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
|
|
M-Bias Plot
