Alignment Stats
| Sequence pairs analysed in total |
49072984 |
| Paired-end alignments with a unique best hit |
30338916 |
| Pairs without alignments under any condition |
12631541 |
| Pairs that did not map uniquely |
6102527 |
| Genomic sequence context not extractable (edges of chromosomes) |
3414 |
|
|
Cytosine Methylation
| Total C's analysed |
1070441903 |
| Methylated C's in CpG context |
13837410 |
| Methylated C's in CHG context |
858667 |
| Methylated C's in CHH context |
3628265 |
| Methylated C's in Unknown context |
34230 |
| Unmethylated C's in CpG context |
121042462 |
| Unmethylated C's in CHG context |
183557048 |
| Unmethylated C's in CHH context |
747518051 |
| Unmethylated C's in Unknown context |
2705275 |
| Percentage methylation (CpG context) |
10.3% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
7593867 |
original top strand |
| CTOT |
7572761 |
complementary to original top strand |
| CTOB |
7575480 |
complementary to original bottom strand |
| OB |
7593394 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
30335502 |
| Unique alignments |
26771374 |
| Duplicates removed |
3564128 |
| Duplicated alignments were found at 3139919 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
644822263 |
| Methylated C's in CpG context |
8163029 |
| Methylated C's in CHG context |
512304 |
| Methylated C's in CHH context |
2175829 |
| Unmethylated C's in CpG context |
72617046 |
| Unmethylated C's in CHG context |
109726981 |
| Unmethylated C's in CHH context |
451627074 |
| Percentage methylation (CpG context) |
10.1% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
|
|
M-Bias Plot
