Alignment Stats
| Sequence pairs analysed in total |
38671370 |
| Paired-end alignments with a unique best hit |
23834102 |
| Pairs without alignments under any condition |
9976314 |
| Pairs that did not map uniquely |
4860954 |
| Genomic sequence context not extractable (edges of chromosomes) |
3175 |
|
|
Cytosine Methylation
| Total C's analysed |
839797939 |
| Methylated C's in CpG context |
11184116 |
| Methylated C's in CHG context |
696921 |
| Methylated C's in CHH context |
2994671 |
| Methylated C's in Unknown context |
27975 |
| Unmethylated C's in CpG context |
95232592 |
| Unmethylated C's in CHG context |
145108747 |
| Unmethylated C's in CHH context |
584580892 |
| Unmethylated C's in Unknown context |
2112098 |
| Percentage methylation (CpG context) |
10.5% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
5938529 |
original top strand |
| CTOT |
5965504 |
complementary to original top strand |
| CTOB |
5979092 |
complementary to original bottom strand |
| OB |
5947802 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
23830927 |
| Unique alignments |
21355848 |
| Duplicates removed |
2475079 |
| Duplicated alignments were found at 2188864 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
517555320 |
| Methylated C's in CpG context |
6757693 |
| Methylated C's in CHG context |
425267 |
| Methylated C's in CHH context |
1827542 |
| Unmethylated C's in CpG context |
58425404 |
| Unmethylated C's in CHG context |
88750219 |
| Unmethylated C's in CHH context |
361369195 |
| Percentage methylation (CpG context) |
10.4% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
|
|
M-Bias Plot
