Alignment Stats
| Sequence pairs analysed in total |
54652876 |
| Paired-end alignments with a unique best hit |
33644497 |
| Pairs without alignments under any condition |
14291848 |
| Pairs that did not map uniquely |
6716531 |
| Genomic sequence context not extractable (edges of chromosomes) |
4579 |
|
|
Cytosine Methylation
| Total C's analysed |
1196487856 |
| Methylated C's in CpG context |
15705909 |
| Methylated C's in CHG context |
997996 |
| Methylated C's in CHH context |
4266399 |
| Methylated C's in Unknown context |
38110 |
| Unmethylated C's in CpG context |
135203659 |
| Unmethylated C's in CHG context |
205835746 |
| Unmethylated C's in CHH context |
834478147 |
| Unmethylated C's in Unknown context |
3029131 |
| Percentage methylation (CpG context) |
10.4% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
8419537 |
original top strand |
| CTOT |
8406880 |
complementary to original top strand |
| CTOB |
8404902 |
complementary to original bottom strand |
| OB |
8408599 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
33639918 |
| Unique alignments |
29375152 |
| Duplicates removed |
4264766 |
| Duplicated alignments were found at 3695983 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
732190594 |
| Methylated C's in CpG context |
9423631 |
| Methylated C's in CHG context |
603203 |
| Methylated C's in CHH context |
2583393 |
| Unmethylated C's in CpG context |
82265495 |
| Unmethylated C's in CHG context |
124967372 |
| Unmethylated C's in CHH context |
512347500 |
| Percentage methylation (CpG context) |
10.3% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
|
|
M-Bias Plot
