Alignment Stats
| Sequence pairs analysed in total |
51969546 |
| Paired-end alignments with a unique best hit |
32529762 |
| Pairs without alignments under any condition |
12847097 |
| Pairs that did not map uniquely |
6592687 |
| Genomic sequence context not extractable (edges of chromosomes) |
4090 |
|
|
Cytosine Methylation
| Total C's analysed |
1150684834 |
| Methylated C's in CpG context |
15437924 |
| Methylated C's in CHG context |
985478 |
| Methylated C's in CHH context |
4199617 |
| Methylated C's in Unknown context |
36832 |
| Unmethylated C's in CpG context |
130997565 |
| Unmethylated C's in CHG context |
200494614 |
| Unmethylated C's in CHH context |
798569636 |
| Unmethylated C's in Unknown context |
2846602 |
| Percentage methylation (CpG context) |
10.5% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
8126667 |
original top strand |
| CTOT |
8130907 |
complementary to original top strand |
| CTOB |
8136174 |
complementary to original bottom strand |
| OB |
8131924 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
32525672 |
| Unique alignments |
28614568 |
| Duplicates removed |
3911104 |
| Duplicated alignments were found at 3414322 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
693808996 |
| Methylated C's in CpG context |
9122530 |
| Methylated C's in CHG context |
587921 |
| Methylated C's in CHH context |
2515070 |
| Unmethylated C's in CpG context |
78555091 |
| Unmethylated C's in CHG context |
119895031 |
| Unmethylated C's in CHH context |
483133353 |
| Percentage methylation (CpG context) |
10.4% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
|
|
M-Bias Plot
