Alignment Stats
| Sequence pairs analysed in total |
39675229 |
| Paired-end alignments with a unique best hit |
24755468 |
| Pairs without alignments under any condition |
9789751 |
| Pairs that did not map uniquely |
5130010 |
| Genomic sequence context not extractable (edges of chromosomes) |
3045 |
|
|
Cytosine Methylation
| Total C's analysed |
868749682 |
| Methylated C's in CpG context |
11617935 |
| Methylated C's in CHG context |
745874 |
| Methylated C's in CHH context |
3185422 |
| Methylated C's in Unknown context |
28365 |
| Unmethylated C's in CpG context |
99227869 |
| Unmethylated C's in CHG context |
151272350 |
| Unmethylated C's in CHH context |
602700232 |
| Unmethylated C's in Unknown context |
2145535 |
| Percentage methylation (CpG context) |
10.5% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
6215083 |
original top strand |
| CTOT |
6160141 |
complementary to original top strand |
| CTOB |
6165384 |
complementary to original bottom strand |
| OB |
6211815 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
24752423 |
| Unique alignments |
21887129 |
| Duplicates removed |
2865294 |
| Duplicated alignments were found at 2529569 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
521118629 |
| Methylated C's in CpG context |
6813705 |
| Methylated C's in CHG context |
441954 |
| Methylated C's in CHH context |
1898020 |
| Unmethylated C's in CpG context |
59199373 |
| Unmethylated C's in CHG context |
89987061 |
| Unmethylated C's in CHH context |
362778516 |
| Percentage methylation (CpG context) |
10.3% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
|
|
M-Bias Plot
