Alignment Stats
| Sequence pairs analysed in total |
46739729 |
| Paired-end alignments with a unique best hit |
29199933 |
| Pairs without alignments under any condition |
11619522 |
| Pairs that did not map uniquely |
5920274 |
| Genomic sequence context not extractable (edges of chromosomes) |
3686 |
|
|
Cytosine Methylation
| Total C's analysed |
1033185635 |
| Methylated C's in CpG context |
13987572 |
| Methylated C's in CHG context |
892804 |
| Methylated C's in CHH context |
3794249 |
| Methylated C's in Unknown context |
32727 |
| Unmethylated C's in CpG context |
117946449 |
| Unmethylated C's in CHG context |
180567038 |
| Unmethylated C's in CHH context |
715997523 |
| Unmethylated C's in Unknown context |
2544881 |
| Percentage methylation (CpG context) |
10.6% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
7267812 |
original top strand |
| CTOT |
7319098 |
complementary to original top strand |
| CTOB |
7328911 |
complementary to original bottom strand |
| OB |
7280426 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
29196247 |
| Unique alignments |
25773614 |
| Duplicates removed |
3422633 |
| Duplicated alignments were found at 3003877 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
625977165 |
| Methylated C's in CpG context |
8282246 |
| Methylated C's in CHG context |
534667 |
| Methylated C's in CHH context |
2276014 |
| Unmethylated C's in CpG context |
71021427 |
| Unmethylated C's in CHG context |
108447960 |
| Unmethylated C's in CHH context |
435414851 |
| Percentage methylation (CpG context) |
10.4% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
|
|
M-Bias Plot
