Alignment Stats
| Sequence pairs analysed in total |
50165026 |
| Paired-end alignments with a unique best hit |
30975420 |
| Pairs without alignments under any condition |
13023018 |
| Pairs that did not map uniquely |
6166588 |
| Genomic sequence context not extractable (edges of chromosomes) |
3880 |
|
|
Cytosine Methylation
| Total C's analysed |
1090983911 |
| Methylated C's in CpG context |
14756465 |
| Methylated C's in CHG context |
928798 |
| Methylated C's in CHH context |
3950640 |
| Methylated C's in Unknown context |
35940 |
| Unmethylated C's in CpG context |
123917132 |
| Unmethylated C's in CHG context |
189121701 |
| Unmethylated C's in CHH context |
758309175 |
| Unmethylated C's in Unknown context |
2725651 |
| Percentage methylation (CpG context) |
10.6% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
7748533 |
original top strand |
| CTOT |
7741135 |
complementary to original top strand |
| CTOB |
7736552 |
complementary to original bottom strand |
| OB |
7745320 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
30971540 |
| Unique alignments |
27363020 |
| Duplicates removed |
3608520 |
| Duplicated alignments were found at 3174318 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
668808705 |
| Methylated C's in CpG context |
8829172 |
| Methylated C's in CHG context |
562477 |
| Methylated C's in CHH context |
2398853 |
| Unmethylated C's in CpG context |
75508229 |
| Unmethylated C's in CHG context |
114890165 |
| Unmethylated C's in CHH context |
466619809 |
| Percentage methylation (CpG context) |
10.5% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
|
|
M-Bias Plot
