zr3644_20_R1.fastp-trim.20201206_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 28634525 lines in total Total number of methylation call strings processed: 57269050 Final Cytosine Methylation Report ================================= Total number of C's analysed: 702973774 Total methylated C's in CpG context: 9195073 Total methylated C's in CHG context: 603531 Total methylated C's in CHH context: 2560469 Total C to T conversions in CpG context: 79458401 Total C to T conversions in CHG context: 120801218 Total C to T conversions in CHH context: 490355082 C methylated in CpG context: 10.4% C methylated in CHG context: 0.5% C methylated in CHH context: 0.5%