Alignment Stats
| Sequence pairs analysed in total |
53149153 |
| Paired-end alignments with a unique best hit |
32579954 |
| Pairs without alignments under any condition |
14142974 |
| Pairs that did not map uniquely |
6426225 |
| Genomic sequence context not extractable (edges of chromosomes) |
3807 |
|
|
Cytosine Methylation
| Total C's analysed |
1149666784 |
| Methylated C's in CpG context |
15395681 |
| Methylated C's in CHG context |
993551 |
| Methylated C's in CHH context |
4206864 |
| Methylated C's in Unknown context |
38277 |
| Unmethylated C's in CpG context |
130582681 |
| Unmethylated C's in CHG context |
199240427 |
| Unmethylated C's in CHH context |
799247580 |
| Unmethylated C's in Unknown context |
2823577 |
| Percentage methylation (CpG context) |
10.5% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
7835017 |
original top strand |
| CTOT |
8443279 |
complementary to original top strand |
| CTOB |
8449686 |
complementary to original bottom strand |
| OB |
7848165 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
32576147 |
| Unique alignments |
28634525 |
| Duplicates removed |
3941622 |
| Duplicated alignments were found at 3459886 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
702973774 |
| Methylated C's in CpG context |
9195073 |
| Methylated C's in CHG context |
603531 |
| Methylated C's in CHH context |
2560469 |
| Unmethylated C's in CpG context |
79458401 |
| Unmethylated C's in CHG context |
120801218 |
| Unmethylated C's in CHH context |
490355082 |
| Percentage methylation (CpG context) |
10.4% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
|
|
M-Bias Plot
