Alignment Stats
| Sequence pairs analysed in total |
50613363 |
| Paired-end alignments with a unique best hit |
31733639 |
| Pairs without alignments under any condition |
12202916 |
| Pairs that did not map uniquely |
6676808 |
| Genomic sequence context not extractable (edges of chromosomes) |
3659 |
|
|
Cytosine Methylation
| Total C's analysed |
1112435555 |
| Methylated C's in CpG context |
13822220 |
| Methylated C's in CHG context |
906946 |
| Methylated C's in CHH context |
3907246 |
| Methylated C's in Unknown context |
33720 |
| Unmethylated C's in CpG context |
127230281 |
| Unmethylated C's in CHG context |
193885510 |
| Unmethylated C's in CHH context |
772683352 |
| Unmethylated C's in Unknown context |
2727121 |
| Percentage methylation (CpG context) |
9.8% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
7979296 |
original top strand |
| CTOT |
7883292 |
complementary to original top strand |
| CTOB |
7883674 |
complementary to original bottom strand |
| OB |
7983718 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
31729980 |
| Unique alignments |
27761215 |
| Duplicates removed |
3968765 |
| Duplicated alignments were found at 3452813 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
652509614 |
| Methylated C's in CpG context |
7936786 |
| Methylated C's in CHG context |
525710 |
| Methylated C's in CHH context |
2275329 |
| Unmethylated C's in CpG context |
74140001 |
| Unmethylated C's in CHG context |
112783027 |
| Unmethylated C's in CHH context |
454848761 |
| Percentage methylation (CpG context) |
9.7% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
|
|
M-Bias Plot
