Alignment Stats
| Sequence pairs analysed in total |
48336315 |
| Paired-end alignments with a unique best hit |
30090769 |
| Pairs without alignments under any condition |
12162908 |
| Pairs that did not map uniquely |
6082638 |
| Genomic sequence context not extractable (edges of chromosomes) |
3618 |
|
|
Cytosine Methylation
| Total C's analysed |
1055910315 |
| Methylated C's in CpG context |
14045904 |
| Methylated C's in CHG context |
897929 |
| Methylated C's in CHH context |
3871260 |
| Methylated C's in Unknown context |
33830 |
| Unmethylated C's in CpG context |
119967807 |
| Unmethylated C's in CHG context |
183401573 |
| Unmethylated C's in CHH context |
733725842 |
| Unmethylated C's in Unknown context |
2622955 |
| Percentage methylation (CpG context) |
10.5% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
7519144 |
original top strand |
| CTOT |
7526589 |
complementary to original top strand |
| CTOB |
7526616 |
complementary to original bottom strand |
| OB |
7514802 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
30087151 |
| Unique alignments |
26856127 |
| Duplicates removed |
3231024 |
| Duplicated alignments were found at 2852076 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
649151629 |
| Methylated C's in CpG context |
8434745 |
| Methylated C's in CHG context |
544466 |
| Methylated C's in CHH context |
2354921 |
| Unmethylated C's in CpG context |
73351172 |
| Unmethylated C's in CHG context |
111793257 |
| Unmethylated C's in CHH context |
452673068 |
| Percentage methylation (CpG context) |
10.3% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
|
|
M-Bias Plot
