Alignment Stats
| Sequence pairs analysed in total |
50675924 |
| Paired-end alignments with a unique best hit |
31778026 |
| Pairs without alignments under any condition |
12419853 |
| Pairs that did not map uniquely |
6478045 |
| Genomic sequence context not extractable (edges of chromosomes) |
4292 |
|
|
Cytosine Methylation
| Total C's analysed |
1118094007 |
| Methylated C's in CpG context |
15429831 |
| Methylated C's in CHG context |
964803 |
| Methylated C's in CHH context |
4106945 |
| Methylated C's in Unknown context |
35840 |
| Unmethylated C's in CpG context |
127142194 |
| Unmethylated C's in CHG context |
195637016 |
| Unmethylated C's in CHH context |
774813218 |
| Unmethylated C's in Unknown context |
2726771 |
| Percentage methylation (CpG context) |
10.8% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
7951380 |
original top strand |
| CTOT |
7920737 |
complementary to original top strand |
| CTOB |
7938755 |
complementary to original bottom strand |
| OB |
7962862 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
31773734 |
| Unique alignments |
28210284 |
| Duplicates removed |
3563450 |
| Duplicated alignments were found at 3145695 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
677785584 |
| Methylated C's in CpG context |
9144375 |
| Methylated C's in CHG context |
577832 |
| Methylated C's in CHH context |
2466511 |
| Unmethylated C's in CpG context |
76529541 |
| Unmethylated C's in CHG context |
117538805 |
| Unmethylated C's in CHH context |
471528520 |
| Percentage methylation (CpG context) |
10.7% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
|
|
M-Bias Plot
