Alignment Stats
Sequence pairs analysed in total |
57127374 |
Paired-end alignments with a unique best hit |
35482645 |
Pairs without alignments under any condition |
13896909 |
Pairs that did not map uniquely |
7747820 |
Genomic sequence context not extractable (edges of chromosomes) |
4749 |
|
|
Cytosine Methylation
Total C's analysed |
1251908031 |
Methylated C's in CpG context |
17065663 |
Methylated C's in CHG context |
1087208 |
Methylated C's in CHH context |
4643082 |
Methylated C's in Unknown context |
40207 |
Unmethylated C's in CpG context |
143654479 |
Unmethylated C's in CHG context |
218984291 |
Unmethylated C's in CHH context |
866473308 |
Unmethylated C's in Unknown context |
3057333 |
Percentage methylation (CpG context) |
10.6% |
Percentage methylation (CHG context) |
0.5% |
Percentage methylation (CHH context) |
0.5% |
Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
OT |
8843581 |
original top strand |
CTOT |
8890479 |
complementary to original top strand |
CTOB |
8894177 |
complementary to original bottom strand |
OB |
8849659 |
original bottom strand |
|
|
Deduplication
Alignments analysed |
35477896 |
Unique alignments |
31026286 |
Duplicates removed |
4451610 |
Duplicated alignments were found at 3836186 different positions |
|
|
Cytosine Methylation after Extraction
Total C's analysed |
747149115 |
Methylated C's in CpG context |
9972703 |
Methylated C's in CHG context |
641569 |
Methylated C's in CHH context |
2745500 |
Unmethylated C's in CpG context |
85047658 |
Unmethylated C's in CHG context |
129551113 |
Unmethylated C's in CHH context |
519190572 |
Percentage methylation (CpG context) |
10.5% |
Percentage methylation (CHG context) |
0.5% |
Percentage methylation (CHH context) |
0.5% |
|
|
M-Bias Plot