Alignment Stats
| Sequence pairs analysed in total |
50134077 |
| Paired-end alignments with a unique best hit |
31344702 |
| Pairs without alignments under any condition |
12085635 |
| Pairs that did not map uniquely |
6703740 |
| Genomic sequence context not extractable (edges of chromosomes) |
3712 |
|
|
Cytosine Methylation
| Total C's analysed |
1088871217 |
| Methylated C's in CpG context |
14928270 |
| Methylated C's in CHG context |
917631 |
| Methylated C's in CHH context |
3921327 |
| Methylated C's in Unknown context |
36292 |
| Unmethylated C's in CpG context |
123938584 |
| Unmethylated C's in CHG context |
189497153 |
| Unmethylated C's in CHH context |
755668252 |
| Unmethylated C's in Unknown context |
2681441 |
| Percentage methylation (CpG context) |
10.8% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
7821783 |
original top strand |
| CTOT |
7841389 |
complementary to original top strand |
| CTOB |
7849611 |
complementary to original bottom strand |
| OB |
7828207 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
31340990 |
| Unique alignments |
27465809 |
| Duplicates removed |
3875181 |
| Duplicated alignments were found at 3384679 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
630642910 |
| Methylated C's in CpG context |
8455671 |
| Methylated C's in CHG context |
525816 |
| Methylated C's in CHH context |
2264120 |
| Unmethylated C's in CpG context |
71325293 |
| Unmethylated C's in CHG context |
108801283 |
| Unmethylated C's in CHH context |
439270727 |
| Percentage methylation (CpG context) |
10.6% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
|
|
M-Bias Plot
