Alignment Stats
| Sequence pairs analysed in total |
58102004 |
| Paired-end alignments with a unique best hit |
36100179 |
| Pairs without alignments under any condition |
14852748 |
| Pairs that did not map uniquely |
7149077 |
| Genomic sequence context not extractable (edges of chromosomes) |
4297 |
|
|
Cytosine Methylation
| Total C's analysed |
1270966403 |
| Methylated C's in CpG context |
18346891 |
| Methylated C's in CHG context |
1100305 |
| Methylated C's in CHH context |
4731062 |
| Methylated C's in Unknown context |
44588 |
| Unmethylated C's in CpG context |
142823649 |
| Unmethylated C's in CHG context |
219609453 |
| Unmethylated C's in CHH context |
884355043 |
| Unmethylated C's in Unknown context |
3189323 |
| Percentage methylation (CpG context) |
11.4% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
9028133 |
original top strand |
| CTOT |
9015692 |
complementary to original top strand |
| CTOB |
9020563 |
complementary to original bottom strand |
| OB |
9031494 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
36095882 |
| Unique alignments |
31774577 |
| Duplicates removed |
4321305 |
| Duplicated alignments were found at 3784438 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
768281077 |
| Methylated C's in CpG context |
10842135 |
| Methylated C's in CHG context |
657578 |
| Methylated C's in CHH context |
2833118 |
| Unmethylated C's in CpG context |
85902809 |
| Unmethylated C's in CHG context |
131629506 |
| Unmethylated C's in CHH context |
536415931 |
| Percentage methylation (CpG context) |
11.2% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
|
|
M-Bias Plot
