Alignment Stats
Sequence pairs analysed in total |
36184563 |
Paired-end alignments with a unique best hit |
22562282 |
Pairs without alignments under any condition |
9169795 |
Pairs that did not map uniquely |
4452486 |
Genomic sequence context not extractable (edges of chromosomes) |
2409 |
|
|
Cytosine Methylation
Total C's analysed |
792291751 |
Methylated C's in CpG context |
12075264 |
Methylated C's in CHG context |
701440 |
Methylated C's in CHH context |
2955332 |
Methylated C's in Unknown context |
28289 |
Unmethylated C's in CpG context |
88203404 |
Unmethylated C's in CHG context |
137175350 |
Unmethylated C's in CHH context |
551180961 |
Unmethylated C's in Unknown context |
1967195 |
Percentage methylation (CpG context) |
12.0% |
Percentage methylation (CHG context) |
0.5% |
Percentage methylation (CHH context) |
0.5% |
Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
OT |
5615888 |
original top strand |
CTOT |
5663921 |
complementary to original top strand |
CTOB |
5662867 |
complementary to original bottom strand |
OB |
5617197 |
original bottom strand |
|
|
Deduplication
Alignments analysed |
22559873 |
Unique alignments |
20151779 |
Duplicates removed |
2408094 |
Duplicated alignments were found at 2137773 different positions |
|
|
Cytosine Methylation after Extraction
Total C's analysed |
484838415 |
Methylated C's in CpG context |
7220083 |
Methylated C's in CHG context |
424785 |
Methylated C's in CHH context |
1792945 |
Unmethylated C's in CpG context |
53754279 |
Unmethylated C's in CHG context |
83253537 |
Unmethylated C's in CHH context |
338392786 |
Percentage methylation (CpG context) |
11.8% |
Percentage methylation (CHG context) |
0.5% |
Percentage methylation (CHH context) |
0.5% |
|
|
M-Bias Plot