Alignment Stats
| Sequence pairs analysed in total |
52950721 |
| Paired-end alignments with a unique best hit |
32796899 |
| Pairs without alignments under any condition |
13651711 |
| Pairs that did not map uniquely |
6502111 |
| Genomic sequence context not extractable (edges of chromosomes) |
4307 |
|
|
Cytosine Methylation
| Total C's analysed |
1159185195 |
| Methylated C's in CpG context |
15626981 |
| Methylated C's in CHG context |
989548 |
| Methylated C's in CHH context |
4243671 |
| Methylated C's in Unknown context |
38097 |
| Unmethylated C's in CpG context |
130883638 |
| Unmethylated C's in CHG context |
200433137 |
| Unmethylated C's in CHH context |
807008220 |
| Unmethylated C's in Unknown context |
2904211 |
| Percentage methylation (CpG context) |
10.7% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
8192706 |
original top strand |
| CTOT |
8193157 |
complementary to original top strand |
| CTOB |
8206126 |
complementary to original bottom strand |
| OB |
8200603 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
32792592 |
| Unique alignments |
28813362 |
| Duplicates removed |
3979230 |
| Duplicated alignments were found at 3481268 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
706165084 |
| Methylated C's in CpG context |
9316772 |
| Methylated C's in CHG context |
595443 |
| Methylated C's in CHH context |
2559208 |
| Unmethylated C's in CpG context |
79271442 |
| Unmethylated C's in CHG context |
121088433 |
| Unmethylated C's in CHH context |
493333786 |
| Percentage methylation (CpG context) |
10.5% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
|
|
M-Bias Plot
