Alignment Stats
| Sequence pairs analysed in total |
46634543 |
| Paired-end alignments with a unique best hit |
29003146 |
| Pairs without alignments under any condition |
11943464 |
| Pairs that did not map uniquely |
5687933 |
| Genomic sequence context not extractable (edges of chromosomes) |
3106 |
|
|
Cytosine Methylation
| Total C's analysed |
1012845722 |
| Methylated C's in CpG context |
12471833 |
| Methylated C's in CHG context |
803989 |
| Methylated C's in CHH context |
3447972 |
| Methylated C's in Unknown context |
31058 |
| Unmethylated C's in CpG context |
113531079 |
| Unmethylated C's in CHG context |
170581064 |
| Unmethylated C's in CHH context |
712009785 |
| Unmethylated C's in Unknown context |
2618222 |
| Percentage methylation (CpG context) |
9.9% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
7225443 |
original top strand |
| CTOT |
7291497 |
complementary to original top strand |
| CTOB |
7268237 |
complementary to original bottom strand |
| OB |
7214863 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
29000040 |
| Unique alignments |
25709252 |
| Duplicates removed |
3290788 |
| Duplicated alignments were found at 2912852 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
610219881 |
| Methylated C's in CpG context |
7329386 |
| Methylated C's in CHG context |
479331 |
| Methylated C's in CHH context |
2066164 |
| Unmethylated C's in CpG context |
68031292 |
| Unmethylated C's in CHG context |
101907222 |
| Unmethylated C's in CHH context |
430406486 |
| Percentage methylation (CpG context) |
9.7% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
|
|
M-Bias Plot
