Alignment Stats
| Sequence pairs analysed in total |
55732442 |
| Paired-end alignments with a unique best hit |
34313844 |
| Pairs without alignments under any condition |
14305475 |
| Pairs that did not map uniquely |
7113123 |
| Genomic sequence context not extractable (edges of chromosomes) |
4587 |
|
|
Cytosine Methylation
| Total C's analysed |
1203987823 |
| Methylated C's in CpG context |
16464158 |
| Methylated C's in CHG context |
1020445 |
| Methylated C's in CHH context |
4398768 |
| Methylated C's in Unknown context |
41528 |
| Unmethylated C's in CpG context |
137191904 |
| Unmethylated C's in CHG context |
209377026 |
| Unmethylated C's in CHH context |
835535522 |
| Unmethylated C's in Unknown context |
3013713 |
| Percentage methylation (CpG context) |
10.7% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
8563117 |
original top strand |
| CTOT |
8590546 |
complementary to original top strand |
| CTOB |
8588367 |
complementary to original bottom strand |
| OB |
8567227 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
34309257 |
| Unique alignments |
30244124 |
| Duplicates removed |
4065133 |
| Duplicated alignments were found at 3556016 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
722634891 |
| Methylated C's in CpG context |
9665871 |
| Methylated C's in CHG context |
605782 |
| Methylated C's in CHH context |
2620199 |
| Unmethylated C's in CpG context |
81795117 |
| Unmethylated C's in CHG context |
124554490 |
| Unmethylated C's in CHH context |
503393432 |
| Percentage methylation (CpG context) |
10.6% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
|
|
M-Bias Plot
