Alignment Stats
| Sequence pairs analysed in total |
51598026 |
| Paired-end alignments with a unique best hit |
31760576 |
| Pairs without alignments under any condition |
13253207 |
| Pairs that did not map uniquely |
6584243 |
| Genomic sequence context not extractable (edges of chromosomes) |
4473 |
|
|
Cytosine Methylation
| Total C's analysed |
1118051595 |
| Methylated C's in CpG context |
15758178 |
| Methylated C's in CHG context |
948700 |
| Methylated C's in CHH context |
4102459 |
| Methylated C's in Unknown context |
39023 |
| Unmethylated C's in CpG context |
127363683 |
| Unmethylated C's in CHG context |
195086907 |
| Unmethylated C's in CHH context |
774791668 |
| Unmethylated C's in Unknown context |
2783347 |
| Percentage methylation (CpG context) |
11.0% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
7978000 |
original top strand |
| CTOT |
7907728 |
complementary to original top strand |
| CTOB |
7901326 |
complementary to original bottom strand |
| OB |
7969049 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
31756103 |
| Unique alignments |
27938619 |
| Duplicates removed |
3817484 |
| Duplicated alignments were found at 3335957 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
669818145 |
| Methylated C's in CpG context |
9224758 |
| Methylated C's in CHG context |
561298 |
| Methylated C's in CHH context |
2432892 |
| Unmethylated C's in CpG context |
75772675 |
| Unmethylated C's in CHG context |
115809548 |
| Unmethylated C's in CHH context |
466016974 |
| Percentage methylation (CpG context) |
10.9% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
|
|
M-Bias Plot
