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        If you use plots from MultiQC in a publication or presentation, please cite:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

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        About MultiQC

        This report was generated using MultiQC, version 1.8

        You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0

        For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info

        You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/ewels/MultiQC

        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

        Report generated on 2021-02-27, 09:48 based on data in: /gscratch/scrubbed/sr320/021321-hw-bs

        General Statistics

        Showing 24/24 rows and 6/8 columns.
        Sample Name% mCpG% mCHG% mCHHM C's% Dups% Aligned
        zr3644_10_R1
        10.9%
        0.5%
        0.5%
        669.8
        12.0%
        61.6%
        zr3644_11_R1
        10.6%
        0.5%
        0.5%
        722.6
        11.8%
        61.6%
        zr3644_12_R1
        9.7%
        0.5%
        0.5%
        610.2
        11.3%
        62.2%
        zr3644_13_R1
        10.5%
        0.5%
        0.5%
        706.2
        12.1%
        61.9%
        zr3644_14_R1
        11.8%
        0.5%
        0.5%
        484.8
        10.7%
        62.4%
        zr3644_15_R1
        11.2%
        0.5%
        0.5%
        768.3
        12.0%
        62.1%
        zr3644_16_R1
        10.6%
        0.5%
        0.5%
        630.6
        12.4%
        62.5%
        zr3644_17_R1
        10.5%
        0.5%
        0.5%
        747.1
        12.6%
        62.1%
        zr3644_18_R1
        10.7%
        0.5%
        0.5%
        677.8
        11.2%
        62.7%
        zr3644_19_R1
        10.3%
        0.5%
        0.5%
        649.2
        10.7%
        62.3%
        zr3644_1_R1
        9.7%
        0.5%
        0.5%
        652.5
        12.5%
        62.7%
        zr3644_20_R1
        10.4%
        0.5%
        0.5%
        703.0
        12.1%
        61.3%
        zr3644_21_R1
        10.5%
        0.5%
        0.5%
        668.8
        11.7%
        61.7%
        zr3644_22_R1
        10.4%
        0.5%
        0.5%
        626.0
        11.7%
        62.5%
        zr3644_23_R1
        10.3%
        0.5%
        0.5%
        521.1
        11.6%
        62.4%
        zr3644_24_R1
        10.4%
        0.5%
        0.5%
        693.8
        12.0%
        62.6%
        zr3644_2_R1
        10.3%
        0.5%
        0.5%
        732.2
        12.7%
        61.6%
        zr3644_3_R1
        10.4%
        0.5%
        0.5%
        517.6
        10.4%
        61.6%
        zr3644_4_R1
        10.1%
        0.5%
        0.5%
        644.8
        11.8%
        61.8%
        zr3644_5_R1
        10.5%
        0.5%
        0.5%
        587.3
        10.9%
        61.8%
        zr3644_6_R1
        10.4%
        0.5%
        0.5%
        698.0
        12.2%
        62.3%
        zr3644_7_R1
        10.6%
        0.5%
        0.5%
        1073.4
        11.5%
        61.6%
        zr3644_8_R1
        10.7%
        0.5%
        0.5%
        556.0
        10.9%
        61.9%
        zr3644_9_R1
        10.9%
        0.5%
        0.5%
        581.1
        12.6%
        61.9%

        Bismark

        Bismark is a tool to map bisulfite converted sequence reads and determine cytosine methylation states.

        Alignment Rates

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        Deduplication

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        Strand Alignment

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        Cytosine Methylation

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        M-Bias

        This plot shows the average percentage methylation and coverage across reads. See the bismark user guide for more information on how these numbers are generated.

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        MultiQC v1.8 - Written by Phil Ewels, available on GitHub.

        This report uses HighCharts, jQuery, jQuery UI, Bootstrap, FileSaver.js and clipboard.js.