File Total Reads Aligned Reads Unaligned Reads Ambiguously Aligned Reads No Genomic Sequence Duplicate Reads (removed) Unique Reads (remaining) Total Cs Methylated CpGs Unmethylated CpGs Methylated chgs Unmethylated chgs Methylated CHHs Unmethylated CHHs zr3644_10_R1.fastp-trim.20201206_bismark_bt2_pe.bam 51598026 31756103 13253207 6584243 4473 3817484 27938619 669818145 9224758 75772675 561298 115809548 2432892 466016974 zr3644_11_R1.fastp-trim.20201206_bismark_bt2_pe.bam 55732442 34309257 14305475 7113123 4587 4065133 30244124 722634891 9665871 81795117 605782 124554490 2620199 503393432 zr3644_12_R1.fastp-trim.20201206_bismark_bt2_pe.bam 46634543 29000040 11943464 5687933 3106 3290788 25709252 610219881 7329386 68031292 479331 101907222 2066164 430406486 zr3644_13_R1.fastp-trim.20201206_bismark_bt2_pe.bam 52950721 32792592 13651711 6502111 4307 3979230 28813362 706165084 9316772 79271442 595443 121088433 2559208 493333786 zr3644_14_R1.fastp-trim.20201206_bismark_bt2_pe.bam 36184563 22559873 9169795 4452486 2409 2408094 20151779 484838415 7220083 53754279 424785 83253537 1792945 338392786 zr3644_15_R1.fastp-trim.20201206_bismark_bt2_pe.bam 58102004 36095882 14852748 7149077 4297 4321305 31774577 768281077 10842135 85902809 657578 131629506 2833118 536415931 zr3644_16_R1.fastp-trim.20201206_bismark_bt2_pe.bam 50134077 31340990 12085635 6703740 3712 3875181 27465809 630642910 8455671 71325293 525816 108801283 2264120 439270727 zr3644_17_R1.fastp-trim.20201206_bismark_bt2_pe.bam 57127374 35477896 13896909 7747820 4749 4451610 31026286 747149115 9972703 85047658 641569 129551113 2745500 519190572 zr3644_18_R1.fastp-trim.20201206_bismark_bt2_pe.bam 50675924 31773734 12419853 6478045 4292 3563450 28210284 677785584 9144375 76529541 577832 117538805 2466511 471528520 zr3644_19_R1.fastp-trim.20201206_bismark_bt2_pe.bam 48336315 30087151 12162908 6082638 3618 3231024 26856127 649151629 8434745 73351172 544466 111793257 2354921 452673068 zr3644_1_R1.fastp-trim.20201206_bismark_bt2_pe.bam 50613363 31729980 12202916 6676808 3659 3968765 27761215 652509614 7936786 74140001 525710 112783027 2275329 454848761 zr3644_20_R1.fastp-trim.20201206_bismark_bt2_pe.bam 53149153 32576147 14142974 6426225 3807 3941622 28634525 702973774 9195073 79458401 603531 120801218 2560469 490355082 zr3644_21_R1.fastp-trim.20201206_bismark_bt2_pe.bam 50165026 30971540 13023018 6166588 3880 3608520 27363020 668808705 8829172 75508229 562477 114890165 2398853 466619809 zr3644_22_R1.fastp-trim.20201206_bismark_bt2_pe.bam 46739729 29196247 11619522 5920274 3686 3422633 25773614 625977165 8282246 71021427 534667 108447960 2276014 435414851 zr3644_23_R1.fastp-trim.20201206_bismark_bt2_pe.bam 39675229 24752423 9789751 5130010 3045 2865294 21887129 521118629 6813705 59199373 441954 89987061 1898020 362778516 zr3644_24_R1.fastp-trim.20201206_bismark_bt2_pe.bam 51969546 32525672 12847097 6592687 4090 3911104 28614568 693808996 9122530 78555091 587921 119895031 2515070 483133353 zr3644_2_R1.fastp-trim.20201206_bismark_bt2_pe.bam 54652876 33639918 14291848 6716531 4579 4264766 29375152 732190594 9423631 82265495 603203 124967372 2583393 512347500 zr3644_3_R1.fastp-trim.20201206_bismark_bt2_pe.bam 38671370 23830927 9976314 4860954 3175 2475079 21355848 517555320 6757693 58425404 425267 88750219 1827542 361369195 zr3644_4_R1.fastp-trim.20201206_bismark_bt2_pe.bam 49072984 30335502 12631541 6102527 3414 3564128 26771374 644822263 8163029 72617046 512304 109726981 2175829 451627074 zr3644_5_R1.fastp-trim.20201206_bismark_bt2_pe.bam 43865548 27103949 11405348 5353077 3174 2948301 24155648 587256545 7677529 65780729 490345 100557046 2093840 410657056 zr3644_6_R1.fastp-trim.20201206_bismark_bt2_pe.bam 52883485 32923564 13405823 6550295 3803 4016145 28907419 697964845 9092790 78430613 584509 119686169 2524196 487646568 zr3644_7_R1.fastp-trim.20201206_bismark_bt2_pe.bam 81002273 49856635 21226484 9912960 6194 5740692 44115943 1073400308 14192196 120186442 895497 183148940 3867789 751109444 zr3644_8_R1.fastp-trim.20201206_bismark_bt2_pe.bam 42084665 26051067 10634728 5395656 3214 2848399 23202668 555970190 7498791 62836784 477736 95848491 2073193 387235195 zr3644_9_R1.fastp-trim.20201206_bismark_bt2_pe.bam 47320068 29292906 11480693 6543143 3326 3686674 25606232 581087866 8086032 65981858 479498 100761982 2089186 403689310