Alignment Stats
| Sequences analysed in total |
49730113 |
| Single-end alignments with a unique best hit |
15462117 |
| Sequences without alignments under any condition |
14857626 |
| Sequences that did not map uniquely |
19410370 |
| Genomic sequence context not extractable (edges of chromosomes) |
14818 |
|
|
Cytosine Methylation
| Total C's analysed |
94652195 |
| Methylated C's in CpG context |
12800766 |
| Methylated C's in CHG context |
441731 |
| Methylated C's in CHH context |
5214036 |
| Methylated C's in Unknown context |
2528 |
| Unmethylated C's in CpG context |
2513676 |
| Unmethylated C's in CHG context |
18777732 |
| Unmethylated C's in CHH context |
54904254 |
| Unmethylated C's in Unknown context |
17310 |
| Percentage methylation (CpG context) |
83.6% |
| Percentage methylation (CHG context) |
2.3% |
| Percentage methylation (CHH context) |
8.7% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
3528969 |
original top strand |
| CTOT |
4227492 |
complementary to original top strand |
| CTOB |
4186984 |
complementary to original bottom strand |
| OB |
3503854 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
15447299 |
| Unique alignments |
10765743 |
| Duplicates removed |
4681556 |
| Duplicated alignments were found at 1888964 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
64930647 |
| Methylated C's in CpG context |
7871119 |
| Methylated C's in CHG context |
320635 |
| Methylated C's in CHH context |
4170941 |
| Unmethylated C's in CpG context |
1765508 |
| Unmethylated C's in CHG context |
12298987 |
| Unmethylated C's in CHH context |
38503457 |
| Percentage methylation (CpG context) |
81.7% |
| Percentage methylation (CHG context) |
2.5% |
| Percentage methylation (CHH context) |
9.8% |
|
|
M-Bias Plot
