zr1394_7_s456_trimmed_bismark_bt2.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 10765743 lines in total Total number of methylation call strings processed: 10765743 Final Cytosine Methylation Report ================================= Total number of C's analysed: 64930647 Total methylated C's in CpG context: 7871119 Total methylated C's in CHG context: 320635 Total methylated C's in CHH context: 4170941 Total C to T conversions in CpG context: 1765508 Total C to T conversions in CHG context: 12298987 Total C to T conversions in CHH context: 38503457 C methylated in CpG context: 81.7% C methylated in CHG context: 2.5% C methylated in CHH context: 9.8%