Alignment Stats
Sequences analysed in total |
46455148 |
Single-end alignments with a unique best hit |
15623039 |
Sequences without alignments under any condition |
13764452 |
Sequences that did not map uniquely |
17067657 |
Genomic sequence context not extractable (edges of chromosomes) |
12143 |
|
|
Cytosine Methylation
Total C's analysed |
91279017 |
Methylated C's in CpG context |
9068779 |
Methylated C's in CHG context |
406529 |
Methylated C's in CHH context |
5393062 |
Methylated C's in Unknown context |
1851 |
Unmethylated C's in CpG context |
2345574 |
Unmethylated C's in CHG context |
17647340 |
Unmethylated C's in CHH context |
56417733 |
Unmethylated C's in Unknown context |
15035 |
Percentage methylation (CpG context) |
79.5% |
Percentage methylation (CHG context) |
2.3% |
Percentage methylation (CHH context) |
8.7% |
Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
OT |
3476758 |
original top strand |
CTOT |
4353366 |
complementary to original top strand |
CTOB |
4320773 |
complementary to original bottom strand |
OB |
3459999 |
original bottom strand |
|
|
Deduplication
Alignments analysed |
15610896 |
Unique alignments |
11898674 |
Duplicates removed |
3712222 |
Duplicated alignments were found at 1790136 different positions |
|
|
Cytosine Methylation after Extraction
Total C's analysed |
68879669 |
Methylated C's in CpG context |
6320809 |
Methylated C's in CHG context |
308317 |
Methylated C's in CHH context |
4429364 |
Unmethylated C's in CpG context |
1817405 |
Unmethylated C's in CHG context |
12911503 |
Unmethylated C's in CHH context |
43092271 |
Percentage methylation (CpG context) |
77.7% |
Percentage methylation (CHG context) |
2.3% |
Percentage methylation (CHH context) |
9.3% |
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|
M-Bias Plot
|