Alignment Stats
| Sequences analysed in total |
46455148 |
| Single-end alignments with a unique best hit |
15623039 |
| Sequences without alignments under any condition |
13764452 |
| Sequences that did not map uniquely |
17067657 |
| Genomic sequence context not extractable (edges of chromosomes) |
12143 |
|
|
Cytosine Methylation
| Total C's analysed |
91279017 |
| Methylated C's in CpG context |
9068779 |
| Methylated C's in CHG context |
406529 |
| Methylated C's in CHH context |
5393062 |
| Methylated C's in Unknown context |
1851 |
| Unmethylated C's in CpG context |
2345574 |
| Unmethylated C's in CHG context |
17647340 |
| Unmethylated C's in CHH context |
56417733 |
| Unmethylated C's in Unknown context |
15035 |
| Percentage methylation (CpG context) |
79.5% |
| Percentage methylation (CHG context) |
2.3% |
| Percentage methylation (CHH context) |
8.7% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
3476758 |
original top strand |
| CTOT |
4353366 |
complementary to original top strand |
| CTOB |
4320773 |
complementary to original bottom strand |
| OB |
3459999 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
15610896 |
| Unique alignments |
11898674 |
| Duplicates removed |
3712222 |
| Duplicated alignments were found at 1790136 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
68879669 |
| Methylated C's in CpG context |
6320809 |
| Methylated C's in CHG context |
308317 |
| Methylated C's in CHH context |
4429364 |
| Unmethylated C's in CpG context |
1817405 |
| Unmethylated C's in CHG context |
12911503 |
| Unmethylated C's in CHH context |
43092271 |
| Percentage methylation (CpG context) |
77.7% |
| Percentage methylation (CHG context) |
2.3% |
| Percentage methylation (CHH context) |
9.3% |
|
|
M-Bias Plot
