zr1394_6_s456_trimmed_bismark_bt2.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 11898674 lines in total Total number of methylation call strings processed: 11898674 Final Cytosine Methylation Report ================================= Total number of C's analysed: 68879669 Total methylated C's in CpG context: 6320809 Total methylated C's in CHG context: 308317 Total methylated C's in CHH context: 4429364 Total C to T conversions in CpG context: 1817405 Total C to T conversions in CHG context: 12911503 Total C to T conversions in CHH context: 43092271 C methylated in CpG context: 77.7% C methylated in CHG context: 2.3% C methylated in CHH context: 9.3%