zr1394_5_s456_trimmed_bismark_bt2.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 11859086 lines in total Total number of methylation call strings processed: 11859086 Final Cytosine Methylation Report ================================= Total number of C's analysed: 69420697 Total methylated C's in CpG context: 6725035 Total methylated C's in CHG context: 308623 Total methylated C's in CHH context: 4618857 Total C to T conversions in CpG context: 2383446 Total C to T conversions in CHG context: 13280520 Total C to T conversions in CHH context: 42104216 C methylated in CpG context: 73.8% C methylated in CHG context: 2.3% C methylated in CHH context: 9.9%