Alignment Stats
| Sequences analysed in total |
44905078 |
| Single-end alignments with a unique best hit |
13945808 |
| Sequences without alignments under any condition |
13481308 |
| Sequences that did not map uniquely |
17477962 |
| Genomic sequence context not extractable (edges of chromosomes) |
12622 |
|
|
Cytosine Methylation
| Total C's analysed |
85421822 |
| Methylated C's in CpG context |
11788331 |
| Methylated C's in CHG context |
407048 |
| Methylated C's in CHH context |
4800476 |
| Methylated C's in Unknown context |
2127 |
| Unmethylated C's in CpG context |
1942535 |
| Unmethylated C's in CHG context |
16959647 |
| Unmethylated C's in CHH context |
49523785 |
| Unmethylated C's in Unknown context |
15252 |
| Percentage methylation (CpG context) |
85.9% |
| Percentage methylation (CHG context) |
2.3% |
| Percentage methylation (CHH context) |
8.8% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
3106857 |
original top strand |
| CTOT |
3883121 |
complementary to original top strand |
| CTOB |
3860990 |
complementary to original bottom strand |
| OB |
3082218 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
13933186 |
| Unique alignments |
9579915 |
| Duplicates removed |
4353271 |
| Duplicated alignments were found at 1712445 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
57797022 |
| Methylated C's in CpG context |
7147884 |
| Methylated C's in CHG context |
292457 |
| Methylated C's in CHH context |
3772656 |
| Unmethylated C's in CpG context |
1323418 |
| Unmethylated C's in CHG context |
10962379 |
| Unmethylated C's in CHH context |
34298228 |
| Percentage methylation (CpG context) |
84.4% |
| Percentage methylation (CHG context) |
2.6% |
| Percentage methylation (CHH context) |
9.9% |
|
|
M-Bias Plot
