zr1394_2_s456_trimmed_bismark_bt2.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 10344013 lines in total Total number of methylation call strings processed: 10344013 Final Cytosine Methylation Report ================================= Total number of C's analysed: 61756286 Total methylated C's in CpG context: 7131612 Total methylated C's in CHG context: 297938 Total methylated C's in CHH context: 4106610 Total C to T conversions in CpG context: 1653180 Total C to T conversions in CHG context: 11820461 Total C to T conversions in CHH context: 36746485 C methylated in CpG context: 81.2% C methylated in CHG context: 2.5% C methylated in CHH context: 10.1%