zr1394_1_s456_trimmed_bismark_bt2.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 10263164 lines in total Total number of methylation call strings processed: 10263164 Final Cytosine Methylation Report ================================= Total number of C's analysed: 61540104 Total methylated C's in CpG context: 7261799 Total methylated C's in CHG context: 303140 Total methylated C's in CHH context: 3988762 Total C to T conversions in CpG context: 1790508 Total C to T conversions in CHG context: 11577501 Total C to T conversions in CHH context: 36618394 C methylated in CpG context: 80.2% C methylated in CHG context: 2.6% C methylated in CHH context: 9.8%