zr1394_18_s456_trimmed_bismark_bt2.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 12104246 lines in total Total number of methylation call strings processed: 12104246 Final Cytosine Methylation Report ================================= Total number of C's analysed: 72146273 Total methylated C's in CpG context: 8198593 Total methylated C's in CHG context: 315055 Total methylated C's in CHH context: 4549990 Total C to T conversions in CpG context: 1888052 Total C to T conversions in CHG context: 13985858 Total C to T conversions in CHH context: 43208725 C methylated in CpG context: 81.3% C methylated in CHG context: 2.2% C methylated in CHH context: 9.5%