Alignment Stats
| Sequences analysed in total |
42070546 |
| Single-end alignments with a unique best hit |
12889517 |
| Sequences without alignments under any condition |
12141296 |
| Sequences that did not map uniquely |
17039733 |
| Genomic sequence context not extractable (edges of chromosomes) |
12594 |
|
|
Cytosine Methylation
| Total C's analysed |
80296899 |
| Methylated C's in CpG context |
12864321 |
| Methylated C's in CHG context |
385486 |
| Methylated C's in CHH context |
4484256 |
| Methylated C's in Unknown context |
2313 |
| Unmethylated C's in CpG context |
2034662 |
| Unmethylated C's in CHG context |
16730062 |
| Unmethylated C's in CHH context |
43798112 |
| Unmethylated C's in Unknown context |
15331 |
| Percentage methylation (CpG context) |
86.3% |
| Percentage methylation (CHG context) |
2.3% |
| Percentage methylation (CHH context) |
9.3% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
2930240 |
original top strand |
| CTOT |
3530623 |
complementary to original top strand |
| CTOB |
3505761 |
complementary to original bottom strand |
| OB |
2910299 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
12876923 |
| Unique alignments |
7846470 |
| Duplicates removed |
5030453 |
| Duplicated alignments were found at 1723416 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
48108192 |
| Methylated C's in CpG context |
6661066 |
| Methylated C's in CHG context |
251010 |
| Methylated C's in CHH context |
3311685 |
| Unmethylated C's in CpG context |
1196534 |
| Unmethylated C's in CHG context |
9443102 |
| Unmethylated C's in CHH context |
27244795 |
| Percentage methylation (CpG context) |
84.8% |
| Percentage methylation (CHG context) |
2.6% |
| Percentage methylation (CHH context) |
10.8% |
|
|
M-Bias Plot
