zr1394_17_s456_trimmed_bismark_bt2.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 7846470 lines in total Total number of methylation call strings processed: 7846470 Final Cytosine Methylation Report ================================= Total number of C's analysed: 48108192 Total methylated C's in CpG context: 6661066 Total methylated C's in CHG context: 251010 Total methylated C's in CHH context: 3311685 Total C to T conversions in CpG context: 1196534 Total C to T conversions in CHG context: 9443102 Total C to T conversions in CHH context: 27244795 C methylated in CpG context: 84.8% C methylated in CHG context: 2.6% C methylated in CHH context: 10.8%