Alignment Stats
| Sequences analysed in total |
74531056 |
| Single-end alignments with a unique best hit |
21379604 |
| Sequences without alignments under any condition |
22542289 |
| Sequences that did not map uniquely |
30609163 |
| Genomic sequence context not extractable (edges of chromosomes) |
23016 |
|
|
Cytosine Methylation
| Total C's analysed |
134402420 |
| Methylated C's in CpG context |
22135048 |
| Methylated C's in CHG context |
633998 |
| Methylated C's in CHH context |
7135489 |
| Methylated C's in Unknown context |
4243 |
| Unmethylated C's in CpG context |
3717836 |
| Unmethylated C's in CHG context |
26058014 |
| Unmethylated C's in CHH context |
74722035 |
| Unmethylated C's in Unknown context |
26107 |
| Percentage methylation (CpG context) |
85.6% |
| Percentage methylation (CHG context) |
2.4% |
| Percentage methylation (CHH context) |
8.7% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
4899455 |
original top strand |
| CTOT |
5819536 |
complementary to original top strand |
| CTOB |
5772152 |
complementary to original bottom strand |
| OB |
4865445 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
21356588 |
| Unique alignments |
11923785 |
| Duplicates removed |
9432803 |
| Duplicated alignments were found at 2735889 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
73264966 |
| Methylated C's in CpG context |
10020093 |
| Methylated C's in CHG context |
387586 |
| Methylated C's in CHH context |
5124999 |
| Unmethylated C's in CpG context |
2096343 |
| Unmethylated C's in CHG context |
13149191 |
| Unmethylated C's in CHH context |
42486754 |
| Percentage methylation (CpG context) |
82.7% |
| Percentage methylation (CHG context) |
2.9% |
| Percentage methylation (CHH context) |
10.8% |
|
|
M-Bias Plot
