zr1394_16_s456_trimmed_bismark_bt2.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 11923785 lines in total Total number of methylation call strings processed: 11923785 Final Cytosine Methylation Report ================================= Total number of C's analysed: 73264966 Total methylated C's in CpG context: 10020093 Total methylated C's in CHG context: 387586 Total methylated C's in CHH context: 5124999 Total C to T conversions in CpG context: 2096343 Total C to T conversions in CHG context: 13149191 Total C to T conversions in CHH context: 42486754 C methylated in CpG context: 82.7% C methylated in CHG context: 2.9% C methylated in CHH context: 10.8%