Alignment Stats
| Sequences analysed in total |
67984205 |
| Single-end alignments with a unique best hit |
20005064 |
| Sequences without alignments under any condition |
20315504 |
| Sequences that did not map uniquely |
27663637 |
| Genomic sequence context not extractable (edges of chromosomes) |
20159 |
|
|
Cytosine Methylation
| Total C's analysed |
126658476 |
| Methylated C's in CpG context |
21430002 |
| Methylated C's in CHG context |
605325 |
| Methylated C's in CHH context |
6679570 |
| Methylated C's in Unknown context |
4040 |
| Unmethylated C's in CpG context |
3061995 |
| Unmethylated C's in CHG context |
25424126 |
| Unmethylated C's in CHH context |
69457458 |
| Unmethylated C's in Unknown context |
25389 |
| Percentage methylation (CpG context) |
87.5% |
| Percentage methylation (CHG context) |
2.3% |
| Percentage methylation (CHH context) |
8.8% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
4505105 |
original top strand |
| CTOT |
5524316 |
complementary to original top strand |
| CTOB |
5475061 |
complementary to original bottom strand |
| OB |
4480423 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
19984905 |
| Unique alignments |
10802610 |
| Duplicates removed |
9182295 |
| Duplicated alignments were found at 2586577 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
66776329 |
| Methylated C's in CpG context |
9440679 |
| Methylated C's in CHG context |
363316 |
| Methylated C's in CHH context |
4683749 |
| Unmethylated C's in CpG context |
1675246 |
| Unmethylated C's in CHG context |
12344351 |
| Unmethylated C's in CHH context |
38268988 |
| Percentage methylation (CpG context) |
84.9% |
| Percentage methylation (CHG context) |
2.9% |
| Percentage methylation (CHH context) |
10.9% |
|
|
M-Bias Plot
